GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to PfGW456L13_1895

Finding the characterized proteins for PfGW456L13_1895 (ABC transporter for D-Galactose and D-Glucose, permease component 1) in D-galactose catabolism

Or see clustering for step PfGW456L13_1895

Or see all steps for D-galactose catabolism

Or cluster curated proteins matching a keyword

Definition of PfGW456L13_1895

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 3 other characterized sequences. (Found 4 hits including self hits.)

Removing ignored items reduces this to 1 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for PfGW456L13_1895.)

SMc04258 ABC transporter for D-Cellobiose and D-Salicin, permease component 2 from Sinorhizobium meliloti 1021
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD, reanno::Smeli:SMc04258
43% identical to

PfGW456L13_1895 ABC transporter for D-Galactose and D-Glucose, permease component 1 from Pseudomonas fluorescens GW456-L13
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for PfGW456L13_1895.)

PS417_22140 ABC transporter for D-Glucose-6-Phosphate, permease component 2 from Pseudomonas simiae WCS417
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD, reanno::WCS417:GFF4323
86% identical to

PfGW456L13_1895 ABC transporter for D-Galactose and D-Glucose, permease component 1 from Pseudomonas fluorescens GW456-L13
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD

TC 3.A.1.1.30 / Q88P37 GtsB (GLcF), component of Glucose porter, GtsABCD from Pseudomonas putida (strain KT2440)
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD, TCDB::Q88P37
84% identical to

PfGW456L13_1895 ABC transporter for D-Galactose and D-Glucose, permease component 1 from Pseudomonas fluorescens GW456-L13
PFams: BPD_transp_1
Heteromeric, 302 amino acids: PaperBLAST, CDD