GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dgoD (D-galactonate dehydratase) in D-galactose catabolism

Or see other characterized proteins similar to dgoD

Or see all steps for D-galactose catabolism

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Definition of dgoD

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 382-395 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

G3YE52 galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger
PFams: MR_MLE_N, MR_MLE_C
383 amino acids: PaperBLAST, CDD, Compare to cluster

G3Y8T6 galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger
PFams: MR_MLE_N, MR_MLE_C
383 amino acids: PaperBLAST, CDD, Compare to cluster

GAD_SACS2 / Q97U27 D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus)
Q97U27 gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus
PFams: MR_MLE_N, MR_MLE_C
395 amino acids: PaperBLAST, CDD, Compare to cluster

b4478 D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli K-12 substr. MG1655
Q6BF17 D-galactonate dehydratase (EC 4.2.1.140) from Escherichia coli (strain K12)
DGOD_ECOLI / Q6BF17 D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli (strain K12)
RF|YP_026237 D-galactonate dehydratase; EC 4.2.1.6 from Escherichia coli K12
PFams: MR_MLE_N, MR_MLE_C
382 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS16405 galactonate dehydratase [EC: 4.2.1.6] from Burkholderia phytofirmans PsJN
PFams: MR_MLE_N, MR_MLE_C
382 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

GAD_PICTO / Q6L1T2 D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
Q6L1T2 gluconate/galactonate dehydratase (EC 4.2.1.140); gluconate dehydratase (EC 4.2.1.39) from Picrophilus torridus
PFams: MR_MLE_N, MR_MLE_C
391 amino acids: PaperBLAST, CDD
(similar to BRENDA::Q97U27 from Cluster 1, but similarity to seed sequence is below thresholds)

ARAD_RHILW / B5ZZ34 L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum bv. trifolii (strain WSM2304)
I9XDU6 L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum bv. trifolii
PFams: ILVD_EDD
579 amino acids: PaperBLAST, CDD