GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for uxuL (D-galactaro-1,5-lactonase (UxuL or UxuF)) in D-galacturonate catabolism

Or see other characterized proteins similar to uxuL

Or see all steps for D-galacturonate catabolism

Or cluster curated proteins matching a keyword

Definition of uxuL

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 348-359 amino acids (not heteromeric)

A0A0H3KPX2 6-phosphogluconolactonase; EC=3.1.1.31
348 amino acids: PaperBLAST, CDD, Compare to cluster

A4JG52 3-carboxymuconate cyclase-like protein
349 amino acids: PaperBLAST, CDD, Compare to cluster

Q39EM3 3-carboxymuconate cyclase-like protein
349 amino acids: PaperBLAST, CDD, Compare to cluster

Q881W7 Uncharacterized protein
359 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS15795 galactaro-1,5-lactonase from Herbaspirillum seropedicae SmR1
PFams: Lactonase
352 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 291-300 amino acids (not heteromeric)

B2UIY8 SMP-30/Gluconolaconase/LRE domain protein
300 amino acids: PaperBLAST, CDD, Compare to cluster

Q888H2 Senescence marker protein-30 family protein
294 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_17365 galactaro-1,5-lactonase from Pseudomonas simiae WCS417
PFams: SGL
291 amino acids: PaperBLAST, CDD, Compare to cluster