GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gnd (6-phosphogluconate dehydrogenase, decarboxylating) in D-gluconate catabolism

Or see other characterized proteins similar to gnd

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Definition of gnd

Fetched 29 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 28 of these sequences

Found 2 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 468-537 amino acids (not heteromeric)

b2029 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) from Escherichia coli K-12 substr. MG1655
P00350 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) from Escherichia coli (strain K12)
6PGD_ECOLI / P00350 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Escherichia coli (strain K12)
P00350 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Escherichia coli
PFams: NAD_binding_2, 6PGD
468 amino acids: PaperBLAST, CDD, Compare to cluster

6PGDH_BACSU / P12013 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; EC 1.1.1.343 from Bacillus subtilis (strain 168)
P12013 phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Bacillus subtilis
PFams: NAD_binding_2, 3HCDH_N, 6PGD
468 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD1_YEAST / P38720 6-phosphogluconate dehydrogenase, decarboxylating 1; EC 1.1.1.44 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
P38720 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Saccharomyces cerevisiae
PFams: NAD_binding_2, 6PGD
489 amino acids: PaperBLAST, CDD, Compare to cluster

P52209 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) from Homo sapiens
6PGD_HUMAN / P52209 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Homo sapiens (Human)
P52209 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Homo sapiens
PFams: NAD_binding_2, 6PGD
483 amino acids: PaperBLAST, CDD, Compare to cluster

P80859 6-phosphogluconate dehydrogenase (decarboxylating) (EC 1.1.1.44) from Bacillus subtilis (strain 168)
6PGD_BACSU / P80859 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating; GNTZII; EC 1.1.1.44 from Bacillus subtilis (strain 168)
P80859 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Bacillus subtilis
PFams: NAD_binding_2, 6PGD
469 amino acids: PaperBLAST, CDD, Compare to cluster

P96789 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Lactococcus lactis
PFams: NAD_binding_2, 6PGD
472 amino acids: PaperBLAST, CDD, Compare to cluster

Q6NHC5 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Corynebacterium glutamicum
PFams: Shikimate_DH, F420_oxidored, NAD_binding_2, 6PGD
484 amino acids: PaperBLAST, CDD, Compare to cluster

Q6WAT5 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Trypanosoma cruzi
PFams: NAD_binding_2, 3HCDH_N, F420_oxidored, Shikimate_DH, 6PGD
477 amino acids: PaperBLAST, CDD, Compare to cluster

Q762L5 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Klebsiella pneumoniae
PFams: NAD_binding_2, 6PGD
468 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD2_ARATH / Q9FWA3 6-phosphogluconate dehydrogenase, decarboxylating 2; EC 1.1.1.44 from Arabidopsis thaliana (Mouse-ear cress)
Q9FWA3 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Arabidopsis thaliana
PFams: NAD_binding_2, 6PGD
486 amino acids: PaperBLAST, CDD, Compare to cluster

Q9WYR9 phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343); phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Thermotoga maritima
PFams: F420_oxidored, NAD_binding_2, 6PGD
469 amino acids: PaperBLAST, CDD, Compare to cluster

CH_122771 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Candida albicans
PFams: NAD_binding_2, 6PGD
517 amino acids: PaperBLAST, CDD, Compare to cluster

RF|NP_595095.1 phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Schizosaccharomyces pombe
PFams: NAD_binding_2, 6PGD
492 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD_SHEEP / P00349 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Ovis aries (Sheep)
PFams: NAD_binding_2, 6PGD
483 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD_TRYBB / P31072 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Trypanosoma brucei brucei
PFams: NAD_binding_2, 3HCDH_N, 6PGD
479 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD2_YEAST / P53319 6-phosphogluconate dehydrogenase, decarboxylating 2; EC 1.1.1.44 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: NAD_binding_2, 6PGD
492 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD_AGGAC / P70718 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Aggregatibacter actinomycetemcomitans (Actinobacillus actinomycetemcomitans) (Haemophilus actinomycetemcomitans)
PFams: NAD_binding_2, 6PGD
484 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD_RAT / P85968 6-phosphogluconate dehydrogenase, decarboxylating; EC 1.1.1.44 from Rattus norvegicus (Rat)
PFams: NAD_binding_2, 6PGD
483 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD2_ORYSJ / Q2R480 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic; OsG6PGH2; EC 1.1.1.44 from Oryza sativa subsp. japonica (Rice)
PFams: NAD_binding_2, 6PGD
508 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD1_SPIOL / Q94KU1 6-phosphogluconate dehydrogenase, decarboxylating 1; EC 1.1.1.44 from Spinacia oleracea (Spinach)
PFams: NAD_binding_2, 6PGD
483 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD2_SPIOL / Q94KU2 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic; EC 1.1.1.44 from Spinacia oleracea (Spinach)
PFams: NAD_binding_2, 6PGD
537 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD3_ARATH / Q9FFR3 6-phosphogluconate dehydrogenase, decarboxylating 3, chloroplastic; EC 1.1.1.44 from Arabidopsis thaliana (Mouse-ear cress)
PFams: NAD_binding_2, 6PGD
487 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD1_ORYSJ / Q9LI00 6-phosphogluconate dehydrogenase, decarboxylating 1; OsG6PGH1; EC 1.1.1.44 from Oryza sativa subsp. japonica (Rice)
Q9LI00 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Oryza sativa
PFams: NAD_binding_2, 6PGD
480 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD1_ARATH / Q9SH69 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic; EC 1.1.1.44 from Arabidopsis thaliana (Mouse-ear cress)
PFams: NAD_binding_2, 6PGD
487 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 298-332 amino acids (not heteromeric)

A0A1J5NX54 phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343); phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Moorella thermoacetica
PFams: F420_oxidored, NAD_binding_2, 6PGD
298 amino acids: PaperBLAST, CDD, Compare to cluster

6PGD_HALVD / D4GST8 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; 6PGDH; EC 1.1.1.343 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii)
D4GST8 phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Haloferax volcanii
PFams: NAD_binding_2, F420_oxidored, 6PGD
299 amino acids: PaperBLAST, CDD, Compare to cluster

6PGDH_GLUOX / G5EBD7 6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating; 6PGDH; EC 1.1.1.343 from Gluconobacter oxydans (strain 621H) (Gluconobacter suboxydans)
G5EBD7 phosphogluconate dehydrogenase (NAD+-dependent, decarboxylating) (EC 1.1.1.343) from Gluconobacter oxydans
PFams: F420_oxidored, NAD_binding_2, 3HCDH_N, 6PGD
332 amino acids: PaperBLAST, CDD, Compare to cluster

Q2RIZ2 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Moorella thermoacetica
PFams: NAD_binding_2, 6PGD
298 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

A4VX60 phosphogluconate dehydrogenase (NADP+-dependent, decarboxylating) (EC 1.1.1.44) from Streptococcus suis
PFams: 6PGD
248 amino acids: PaperBLAST, CDD