GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for gntA (gluconate TRAP transporter, small permease component) in D-gluconate catabolism

Or see other characterized proteins similar to gntA

Or see all steps for D-gluconate catabolism

Or cluster curated proteins matching a keyword

Definition of gntA

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 177-179 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

G8AR26 TRAP dicarboxylate transport system, small permease component (DctQ-like)
179 amino acids: PaperBLAST, CDD, Compare to cluster

Q930R3 TRAP-type small permease component
177 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (1/2 heteromeric)

A0A165IVI0 C4-dicarboxylate ABC transporter permease
170 amino acids: PaperBLAST, CDD

Psest_2123 fusion of gluconokinase and the small permease component of the D-gluconate TRAP transporter from Pseudomonas stutzeri RCH2
PFams: AAA_33, SKI, DctQ
Heteromeric, 376 amino acids: PaperBLAST, CDD