GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for gntB (gluconate TRAP transporter, large permease component) in D-gluconate catabolism

Or see other characterized proteins similar to gntB

Or see all steps for D-gluconate catabolism

Or cluster curated proteins matching a keyword

Definition of gntB

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Azospirillum brasilense

AZOBR_RS15920 Large component of TRAP-type D-gluconate transporter from Azospirillum brasilense Sp245
PFams: DctM
Heteromeric, 426 amino acids: PaperBLAST, CDD (Cluster 1)

Organism unknown

A0A165IWV9 L-dehydroascorbate transporter large permease subunit
425 amino acids: PaperBLAST, CDD (Cluster 1)

Q930R2 TRAP-type large permease component
425 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas stutzeri

Psest_2124 D-gluconate TRAP transporter, large permease component from Pseudomonas stutzeri RCH2
PFams: DctM
Heteromeric, 425 amino acids: PaperBLAST, CDD (Cluster 1)