GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for SMc02872 (N-acetylglucosamine ABC transporter, permease component 1) in D-glucosamine (chitosamine) catabolism

Or see other characterized proteins similar to SMc02872

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Definition of SMc02872

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 308-315 amino acids (1/2 heteromeric)

The first sequence in each cluster is the seed.

PGA1_c27940 N-Acetyl-D-glucosamine ABC transport system, permease component 1 from Phaeobacter inhibens BS107
PFams: BPD_transp_1
Heteromeric, 308 amino acids: PaperBLAST, CDD, Compare to cluster

SMc02872 ABC transporter for N-Acetyl-D-glucosamine, permease protein 1 from Sinorhizobium meliloti 1021
PFams: BPD_transp_1
315 amino acids: PaperBLAST, CDD, Compare to cluster