GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for nagP (N-acetylglucosamine transporter NagP) in D-glucosamine (chitosamine) catabolism

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Definition of nagP

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 432-435 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

TC 2.A.1.7.8 / Q8EBL0 N-acetylglucosamine porter, NagP from Shewanella oneidensis
SO3503 N-acetyl glucosamine transporter, NagP from Shewanella oneidensis MR-1
PFams: MFS_1
435 amino acids: PaperBLAST, CDD, Compare to cluster

Shewana3_3110 N-acetylglucosamine transporter nagP from Shewanella sp. ANA-3
PFams: MFS_1
432 amino acids: PaperBLAST, CDD, Compare to cluster