GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to aglF'

Finding the characterized proteins for aglF' (glucose ABC transporter, permease component 1 (AglF)) in D-glucose catabolism

Or see clustering for step aglF'

Or see all steps for D-glucose catabolism

Or cluster curated proteins matching a keyword

Definition of aglF'

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 2 other characterized sequences. (Found 2 hits including self hits.)

Removing ignored items reduces this to 1 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for aglF'.)

TC 3.A.1.1.32 / Q55472 Membrane bound sugar transport protein, component of The glucosylglycerol uptake transporter (functions in osmoprotection and also transports sucrose and trehalose (Mikkat and Hagemann, 2000) (most similar to 3.A.1.1.8) from Synechocystis sp. (strain PCC 6803)
PFams: BPD_transp_1
Heteromeric, 279 amino acids: PaperBLAST, CDD, TCDB::Q55472
47% identical to

A8LLL5 Inner membrane ABC transporter permease protein
334 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for aglF'.)

TC 3.A.1.1.8 / Q9Z3R6 AglF aka R00696 aka SMC03062, component of Sucrose/maltose/trehalose porter (sucrose-inducible) from Rhizobium meliloti (Sinorhizobium meliloti)
SMc03062 ABC transporter for D-Maltose and D-Trehalose, permease component 1 from Sinorhizobium meliloti 1021
PFams: BPD_transp_1
Heteromeric, 336 amino acids: PaperBLAST, CDD, reanno::Smeli:SMc03062
61% identical to

A8LLL5 Inner membrane ABC transporter permease protein
334 amino acids: PaperBLAST, CDD