GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gadh1 (gluconate 2-dehydrogenase flavoprotein subunit) in D-glucose catabolism

Or see other characterized proteins similar to gadh1

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Definition of gadh1

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 592-615 amino acids (2/5 heteromeric)

The first sequence in each cluster is the seed.

A4PIB0 gluconate 2-dehydrogenase (EC 1.1.1.215) from Gluconobacter frateurii
PFams: GMC_oxred_N, GMC_oxred_C
593 amino acids: PaperBLAST, CDD, Compare to cluster

C0LE03 gluconate 2-dehydrogenase (EC 1.1.1.215) from Pseudomonas fluorescens
PFams: GMC_oxred_N, GMC_oxred_C
594 amino acids: PaperBLAST, CDD, Compare to cluster

GADH1_PANCY / O34214 Gluconate 2-dehydrogenase flavoprotein; GA 2-DH dehydrogenase subunit; GADH dehydrogenase subunit; EC 1.1.99.3 from Pantoea cypripedii (Pectobacterium cypripedii) (Erwinia cypripedii)
O34214 gluconate 2-dehydrogenase dehydrogenase subunit (EC 1.1.99.3) from Pantoea cypripedii
PFams: GMC_oxred_N, GMC_oxred_C
Heteromeric, 615 amino acids: PaperBLAST, CDD, Compare to cluster

G5EBD9 Gluconate 2-dehydrogenase alpha chain; EC=1.1.99.3
592 amino acids: PaperBLAST, CDD, Compare to cluster

Q4KKM7 D-gluconate dehydrogenase dehydrogenase subunit (EC 1.1.99.3) from Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
PFams: GMC_oxred_N, GMC_oxred_C
Heteromeric, 594 amino acids: PaperBLAST, CDD, Compare to cluster