Clusters of Characterized Proteins

Clustering the characterized proteins for dctP (D-glucuronate TRAP transporter, solute receptor component) in D-glucuronate catabolism

Or see other characterized proteins similar to dctP

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Definition of dctP

• UniProt sequence Q88NN8: SubName: Full=TRAP dicarboxylate transporter, DctP subunit {ECO:0000313|EMBL:AAN66793.1};
• Curated sequence Q128M1: Solute-binding protein Bpro_3107
• Curated sequence Q0B2F6: Solute-binding protein Bamb_6123
• Comment: Genetic data from Pseudomonas putida suggests the involvement of a TRAP transporter: dctP-like PP_1169 (Q88NN8), dctQ-like PP_1168 (Q88NN9), and dctM-like PP_1167 (Q88NP0). Furthermore, PP_1169 is nearly identical to Pput_1203, which binds D-glucuronate (see PMC4310620 and PDB:4xfeA). The related substrate-binding proteins Bpro_3107 (Q128M1) and Bamb_6123 (Q0B2F6) was also shown to bind D-glucuronate (and D-galacturonate).

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 323-330 amino acids (2/3 heteromeric)

DCTP_BURCM / Q0B2F6 Solute-binding protein Bamb_6123 from Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia cepacia (strain AMMD))
PFams: DctP
Heteromeric, 328 amino acids: PaperBLAST, CDD, Compare to cluster

DCTP1_POLSJ / Q128M1 Solute-binding protein Bpro_3107 from Polaromonas sp. (strain JS666 / ATCC BAA-500)
PFams: DctP
Heteromeric, 330 amino acids: PaperBLAST, CDD, Compare to cluster

Q88NN8 TRAP dicarboxylate transporter, DctP subunit
323 amino acids: PaperBLAST, CDD, Compare to cluster