GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gudD (D-glucarate dehydratase) in D-glucuronate catabolism

Or see other characterized proteins similar to gudD

Or see all steps for D-glucuronate catabolism

Or cluster curated proteins matching a keyword

Definition of gudD

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 444-451 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q6FFQ2 D-glucarate dehydratase subunit (EC 4.2.1.40) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
GUDD_ACIAD / Q6FFQ2 Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)
Q6FFQ2 glucarate dehydratase (EC 4.2.1.40) from Acinetobacter baylyi
PFams: MR_MLE_C
444 amino acids: PaperBLAST, CDD, Compare to cluster

b2787 D-glucarate dehydratase (EC 4.2.1.40) from Escherichia coli K-12 substr. MG1655
P0AES2 D-glucarate dehydratase (EC 4.2.1.40) from Escherichia coli (strain K12)
GUDD_ECOLI / P0AES2 Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Escherichia coli (strain K12)
RF|NP_417267 glucarate dehydratase; EC 4.2.1.40 from Escherichia coli K12
PFams: MR_MLE_C
446 amino acids: PaperBLAST, CDD, Compare to cluster

P42206 D-glucarate dehydratase subunit (EC 4.2.1.40) from Pseudomonas putida
GUDD_PSEPU / P42206 Glucarate dehydratase; GDH; GlucD; EC 4.2.1.40 from Pseudomonas putida (Arthrobacter siderocapsulatus)
PFams: MR_MLE_N, MR_MLE_C
451 amino acids: PaperBLAST, CDD, Compare to cluster