GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for uxuA (D-mannonate dehydratase) in D-glucuronate catabolism

Or see other characterized proteins similar to uxuA

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Definition of uxuA

Fetched 12 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 12 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 402-419 amino acids (not heteromeric)

MAND2_CAUVC / Q9AAR4 D-mannonate dehydratase CC0532; ManD; EC 4.2.1.8 from Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus)
A0A0H3C643 mannonate dehydratase (EC 4.2.1.8) from Caulobacter vibrioides
PFams: MR_MLE_N, MR_MLE_C
403 amino acids: PaperBLAST, CDD, Compare to cluster

MAND_NOVAD / A4XF23 D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans (strain ATCC 700278 / DSM 12444 / CIP 105152 / NBRC 16084 / F199)
PFams: MR_MLE_N, MR_MLE_C
402 amino acids: PaperBLAST, CDD, Compare to cluster

MAND_SPHWW / A5V6Z0 D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)
PFams: MR_MLE_N, MR_MLE_C
402 amino acids: PaperBLAST, CDD, Compare to cluster

MAND1_CAUSK / B0T0B1 D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp. (strain K31)
PFams: MR_MLE_N, MR_MLE_C
403 amino acids: PaperBLAST, CDD, Compare to cluster

MAND2_CAUSK / B0T4L2 D-mannonate dehydratase Caul1835; ManD; EC 4.2.1.8 from Caulobacter sp. (strain K31)
PFams: MR_MLE_N, MR_MLE_C
403 amino acids: PaperBLAST, CDD, Compare to cluster

MAND_XANOB / G7TAD9 D-mannonate dehydratase; ManD; EC 4.2.1.8 from Xanthomonas oryzae pv. oryzicola (strain BLS256)
PFams: MR_MLE_N, MR_MLE_C
419 amino acids: PaperBLAST, CDD, Compare to cluster

MAND_SPHSS / Q1NAJ2 D-mannonate dehydratase; ManD; EC 4.2.1.8 from Sphingomonas sp. (strain SKA58)
PFams: MR_MLE_N, MR_MLE_C
403 amino acids: PaperBLAST, CDD, Compare to cluster

MAND1_CAUVC / Q9A4L8 D-mannonate dehydratase CC2812; ManD; EC 4.2.1.8 from Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus)
PFams: MR_MLE_N, MR_MLE_C
403 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 360-394 amino acids (not heteromeric)

A4VVI4 mannonate dehydratase (EC 4.2.1.8) from Streptococcus suis
PFams: UxuA, AP_endonuc_2
366 amino acids: PaperBLAST, CDD, Compare to cluster

b4322 D-mannonate dehydratase (EC 4.2.1.8) from Escherichia coli K-12 substr. MG1655
P24215 D-mannonate dehydratase (EC 4.2.1.8) from Escherichia coli (strain K12)
UXUA_ECOLI / P24215 Mannonate dehydratase; D-mannonate hydro-lyase; EC 4.2.1.8 from Escherichia coli (strain K12)
P24215 mannonate dehydratase (EC 4.2.1.8) from Escherichia coli
PFams: UxuA
394 amino acids: PaperBLAST, CDD, Compare to cluster

Q1QT83 mannonate dehydratase (EC 4.2.1.8) from Chromohalobacter salexigens
PFams: UxuA, AP_endonuc_2
391 amino acids: PaperBLAST, CDD, Compare to cluster

Q9WXS4 D-mannonate dehydratase (EC 4.2.1.8) from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: UxuA, AP_endonuc_2
360 amino acids: PaperBLAST, CDD, Compare to cluster