GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for aspA (L-aspartate ammonia-lyase) in L-glutamate catabolism

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Definition of aspA

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 468-478 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b4139 aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli K-12 substr. MG1655
ASPA_ECOLI / P0AC38 Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Escherichia coli (strain K12)
P0AC38 aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
P0AC38 aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli (strain K12)
RF|NP_418562 aspartate ammonia-lyase from Escherichia coli K12
PFams: Lyase_1, FumaraseC_C
478 amino acids: PaperBLAST, CDD, Compare to cluster

Q0PC50 aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni
PFams: Lyase_1, FumaraseC_C
468 amino acids: PaperBLAST, CDD, Compare to cluster

Q9HTD7 aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa
PFams: Lyase_1, FumaraseC_C
474 amino acids: PaperBLAST, CDD, Compare to cluster

Q9LCC6 aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp. (in: Bacteria)
PFams: Lyase_1, FumaraseC_C
468 amino acids: PaperBLAST, CDD, Compare to cluster