GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gltS (L-glutamate:Na+ symporter GltS) in L-glutamate catabolism

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Definition of gltS

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 401-404 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b3653 glutamate:sodium symporter from Escherichia coli K-12 substr. MG1655
GLTS_ECOLI / P0AER8 Sodium/glutamate symporter; Glutamate permease from Escherichia coli (strain K12)
TC 2.A.27.1.1 / P0AER8 Glutamate:Na+ symporter (transports L- and D-glutamate, α-methylglutamate and homocysteate). Swapping the order of the two halves (repeat units) does not decrease activity from Escherichia coli
PFams: Glt_symporter
401 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.27.1.2 / P73275 Glutamate:Na+ symporter
PFams: Glt_symporter
402 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.27.1.3 / Q9HZ58 Probable L-glutamate/N-acetylglutamate uptake porter, GltS.  Involved in N-acetylglutamate catabolism as a carbon and nitrogen source from Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
PFams: Glt_symporter
404 amino acids: PaperBLAST, CDD, Compare to cluster