GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for mal (methylaspartate ammonia-lyase) in L-glutamate catabolism

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Definition of mal

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 413-422 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

MAAL_CITAM / O66145 Methylaspartate ammonia-lyase; MAL; 3-methylaspartate ammonia-lyase; Beta-methylaspartase; EC 4.3.1.2 from Citrobacter amalonaticus
PFams: MAAL_N, MAAL_C, MR_MLE_C
413 amino acids: PaperBLAST, CDD, Compare to cluster

MAAL_CLOTT / Q05514 Methylaspartate ammonia-lyase; MAL; 3-methylaspartase ammonia-lyase; Beta-methylaspartase; EC 4.3.1.2 from Clostridium tetanomorphum
Q05514 methylaspartate ammonia-lyase (EC 4.3.1.2) from Clostridium tetanomorphum
Q05514 methylaspartase subunit (EC 4.3.1.2) from Clostridium tetanomorphum
PFams: MAAL_N, MR_MLE_N, MAAL_C
413 amino acids: PaperBLAST, CDD, Compare to cluster

MAAL1_CARHZ / Q3AEU2 Methylaspartate ammonia-lyase 1; MAL; 3-methylaspartate ammonia-lyase 1; Beta-methylaspartase 1; EC 4.3.1.2 from Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)
Q3AEU2 methylaspartate ammonia-lyase (EC 4.3.1.2) from Carboxydothermus hydrogenoformans
PFams: MAAL_N, MAAL_C, MR_MLE_C
420 amino acids: PaperBLAST, CDD, Compare to cluster

Q5V465 methylaspartate ammonia-lyase (EC 4.3.1.2) from Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
PFams: MAAL_N, MAAL_C, MR_MLE_C
422 amino acids: PaperBLAST, CDD, Compare to cluster