GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dhaD (glycerol dehydrogenase) in glycerol catabolism

Or see other characterized proteins similar to dhaD

Or see all steps for glycerol catabolism

Or cluster curated proteins matching a keyword

Definition of dhaD

Fetched 12 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 10 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 364-450 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A0A1D3TV18 glycerol dehydrogenase (EC 1.1.1.6) from Anaerobium acetethylicum
PFams: Fe-ADH, Fe-ADH_2
379 amino acids: PaperBLAST, CDD, Compare to cluster

A0MLR7 glycerol dehydrogenase (EC 1.1.1.6) from Klebsiella pneumoniae
PFams: Fe-ADH, Fe-ADH_2
380 amino acids: PaperBLAST, CDD, Compare to cluster

B2ZPN8 glycerol dehydrogenase (EC 1.1.1.6) from Klebsiella pneumoniae
PFams: Fe-ADH, Fe-ADH_2
367 amino acids: PaperBLAST, CDD, Compare to cluster

GLD1_SCHPO / O13702 Glycerol dehydrogenase 1; GDH; GLDH; EC 1.1.1.6 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
O13702 glycerol dehydrogenase (EC 1.1.1.6) from Schizosaccharomyces pombe
RF|NP_593651.1 mitochondrial glycerol dehydrogenase Gld1 from Schizosaccharomyces pombe
PFams: Fe-ADH, Fe-ADH_2, DHQ_synthase
450 amino acids: PaperBLAST, CDD, Compare to cluster

Q8ZKM9 glycerol dehydrogenase (EC 1.1.1.6) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: Fe-ADH, Fe-ADH_2
367 amino acids: PaperBLAST, CDD, Compare to cluster

Q9WYQ4 glycerol dehydrogenase (EC 1.1.1.6) from Thermotoga maritima
PFams: Fe-ADH, Fe-ADH_2, DHQ_synthase
364 amino acids: PaperBLAST, CDD, Compare to cluster

GB|AAC44426.1 glycerol dehydrogenase; EC 1.1.1.6 from Pseudomonas putida
PFams: Fe-ADH, Fe-ADH_2
365 amino acids: PaperBLAST, CDD, Compare to cluster

b3945 L-1,2-propanediol dehydrogenase / glycerol dehydrogenase (EC 1.1.1.75; EC 1.1.1.6) from Escherichia coli K-12 substr. MG1655
P0A9S5 L-1,2-propanediol dehydrogenase / glycerol dehydrogenase (EC 1.1.1.75; EC 1.1.1.6) from Escherichia coli (strain K12)
GLDA_ECOLI / P0A9S5 Glycerol dehydrogenase; GDH; GLDH; EC 1.1.1.6 from Escherichia coli (strain K12)
RF|NP_418380 glycerol dehydrogenase; EC 1.1.1.6 from Escherichia coli K12
PFams: Fe-ADH, Fe-ADH_2
367 amino acids: PaperBLAST, CDD, Compare to cluster

GB|AAB48844.1 glycerol dehydrogenase; EC 1.1.1.6 from Citrobacter freundii
PFams: Fe-ADH, Fe-ADH_2
365 amino acids: PaperBLAST, CDD, Compare to cluster

GLDA_GEOSE / P32816 Glycerol dehydrogenase; GDH; GLDH; GlyDH; EC 1.1.1.6 from Geobacillus stearothermophilus (Bacillus stearothermophilus)
GI|142978 glycerol dehydrogenase; EC 1.1.1.6 from Geobacillus stearothermophilus
PFams: Fe-ADH, Fe-ADH_2
370 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

ADH1_GEOTN / A4IP64 Long-chain-alcohol dehydrogenase 1; Alcohol dehydrogenase 1; ADH1; Fatty alcohol oxidoreductase 1; Glycerol dehydrogenase; EC 1.1.1.192; EC 1.1.1.6 from Geobacillus thermodenitrificans (strain NG80-2)
A4IP64 alcohol dehydrogenase (EC 1.1.1.1); long-chain-alcohol dehydrogenase (EC 1.1.1.192) from Geobacillus thermodenitrificans
PFams: Fe-ADH, Fe-ADH_2
395 amino acids: PaperBLAST, CDD

GOLD_LISIN / Q92EU6 NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
PFams: adh_short, Epimerase, KR, adh_short_C2
254 amino acids: PaperBLAST, CDD