GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for glpF (glycerol facilitator glpF) in glycerol catabolism

Or see other characterized proteins similar to glpF

Or see all steps for glycerol catabolism

Or cluster curated proteins matching a keyword

Definition of glpF

Fetched 16 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 16 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by cluster

Bacillus subtilis

TC 1.A.8.2.1 / P18156 Glycerol facilitator from Bacillus subtilis
PFams: MIP
274 amino acids: PaperBLAST, CDD (Cluster 1)

Escherichia coli

b3927 glycerol facilitator from Escherichia coli K-12 substr. MG1655
GLPF_ECOLI / P0AER0 Glycerol uptake facilitator protein; Aquaglyceroporin from Escherichia coli (strain K12)
TC 1.A.8.1.1 / P0AER0 Glycerol facilitator, GlpF. Transports various polyols with decreasing rates as size increases (Heller et al. 1980); also transports arsenite (As(III) and antimonite (Sb(III)) (Meng et al., 2004). Oligomerization may play a role in determining the rate of transport from Escherichia coli
P0AER0 glycerol facilitator from Escherichia coli (strain K12)
RF|NP_418362 aquaglyceroporin from Escherichia coli K12
PFams: MIP
281 amino acids: PaperBLAST, CDD (Cluster 1)

Glycine max

TC 1.A.8.12.1 / P08995 Nodulin-26 aquaporin and glycerol facilitator, NIP (de Paula Santos Martins et al. 2015). Transports NH3 5-fold better than water in Hg2+-sensitive fashion from Glycine max (Soybean)
PFams: MIP
271 amino acids: PaperBLAST, CDD (Cluster 1)

Lactobacillus plantarum

GLPF4_LACPL / F9UMX3 Glycerol uptake facilitator protein 4; D/L-lactic acid transporter; Lactic acid channel from Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
PFams: MIP
238 amino acids: PaperBLAST, CDD (Cluster 1)

LARD_LACPL / F9UST3 D/L-lactic acid transporter; Lactate racemization operon protein LarD; Lactic acid channel from Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
TC 1.A.8.2.4 / C6VJ63 GlpF1; transports water, dihydroxyacetone and glycerol as well as D,L-lactic acid from Lactobacillus plantarum (strain JDM1)
PFams: MIP
238 amino acids: PaperBLAST, CDD (Cluster 1)

GLPF2_LACPL / F9USY3 Glycerol uptake facilitator protein 2 from Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
TC 1.A.8.2.5 / D7V7W8 GlpF2 from Lactobacillus plantarum subsp. plantarum ATCC 14917
PFams: MIP
235 amino acids: PaperBLAST, CDD (Cluster 1)

GLPF3_LACPL / F9UTW9 Glycerol uptake facilitator protein 3 from Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
TC 1.A.8.2.6 / D7V8E7 GlpF3 from Lactobacillus plantarum subsp. plantarum ATCC 14917
PFams: MIP
240 amino acids: PaperBLAST, CDD (Cluster 1)

GLPF5_LACPL / F9UUB3 Glycerol uptake facilitator protein-like 5 from Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
TC 1.A.8.2.7 / D7VEY8 GlpF4.  Transports water, dihydroxyacetone and glycerol as well as D,L-lactic acid from Lactobacillus plantarum subsp. plantarum ATCC 14917
PFams: MIP
250 amino acids: PaperBLAST, CDD (Cluster 1)

Leishmania major

TC 1.A.8.9.3 / Q6Q1Q6 Major aquaglyceroporin, LmAQP1: transports water, glycerol, methylglyoxal, trivalent metalloids such as arsenite and antimonite, dihydroxyacetone and sugar alcohols. Also takes up the activated form or the drug, pentostam from Leishmania major
PFams: MIP
281 amino acids: PaperBLAST, CDD (Cluster 1)

Methanobacterium thermoautotrophicum

TC 1.A.8.13.2 / Q9C4Z5 Hg2+-inhibitable aquaporin, AqpM (transports both water and glycerol as well as CO2) (Kozono et al., 2003; Araya-Secchi et al., 2011). Its 3-d structure has been determined to 1.7 Å. In AqpM, isoleucine replaces a key histidine residue found in the lumen of water channels, which becomes a glycine residue in aquaglyceroporins. As a result of this and other side-chain substituents in the walls of the channel, the channel is intermediate in size and exhibits differentially tuned electrostatics when compared with the other subfamilies from Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133)
PFams: MIP
246 amino acids: PaperBLAST, CDD (Cluster 1)

Mycoplasma gallisepticum

TC 1.A.8.2.3 / P52280 Probable glycerol uptake facilitator protein from Mycoplasma gallisepticum (strain R(low / passage 15 / clone 2))
PFams: MIP
243 amino acids: PaperBLAST, CDD (Cluster 1)

Plasmodium falciparum

TC 1.A.8.9.13 / Q8WPZ6 Aquaglycerolporin, Aqp (high permeability to ammonium, methylamine, glycerol and water) (Beitz et al., 2004) NH4+/NH3+CH3 transporter from Plasmodium falciparum
PFams: MIP
258 amino acids: PaperBLAST, CDD (Cluster 1)

Rattus norvegicus

AQP9_RAT / P56627 Aquaporin-9; AQP-9; Aquaglyceroporin-9 from Rattus norvegicus (Rat)
TC 1.A.8.9.2 / P56627 Aquaporin-9 (Aqp9) (permeable to glycerol, urea, polyols, carbamides, purines, pyrmidines, nucleosides, monocarboxylates, pentavalent methylated arsenicals and the arsenic chemotherapeutic drug, trisenox from Rattus norvegicus (Rat)
RF|NP_075249.1 aquaporin-9 from Rattus norvegicus
PFams: MIP
295 amino acids: PaperBLAST, CDD (Cluster 1)

AQP3_RAT / P47862 Aquaporin-3; AQP-3; 31.4 kDa water channel protein; Aquaglyceroporin-3 from Rattus norvegicus (Rat)
TC 1.A.8.9.1 / P47862 Aquaporin 3. 95% identical to the human orthologue. Poorly permeable to water, but more permeable to glycerol and arsenic trioxide from Rattus norvegicus (Rat)
PFams: MIP
292 amino acids: PaperBLAST, CDD (Cluster 1)

Trypanosoma brucei

TC 1.A.8.9.4 / Q6ZXT4 Aquaporin 1 (permeable to water, glycerol, dihydroxyacetone and urea) from Trypanosoma brucei brucei
GI|46518239 aquaglyceroporin 1 from Trypanosoma brucei brucei
PFams: MIP
321 amino acids: PaperBLAST, CDD (Cluster 1)

Xenopus tropicalis

TC 1.A.8.9.9 / F6QEC2 Aquaporin/glycerol facilitator of 294 aas and 6 TMSs from Xenopus tropicalis
PFams: MIP
294 amino acids: PaperBLAST, CDD (Cluster 1)