GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for tpi (triose-phosphate isomerase) in glycerol catabolism

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Definition of tpi

Fetched 56 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 55 of these sequences

Found 2 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 232-288 amino acids (not heteromeric)

A8B3A8 triose-phosphate isomerase (EC 5.3.1.1) from Rhipicephalus microplus
PFams: TIM
249 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1D3TX75 triose-phosphate isomerase (EC 5.3.1.1) from Anaerobium acetethylicum
PFams: TIM
262 amino acids: PaperBLAST, CDD, Compare to cluster

A2EGX9 triose-phosphate isomerase (EC 5.3.1.1) from Trichomonas vaginalis
PFams: TIM
252 amino acids: PaperBLAST, CDD, Compare to cluster

A2FT29 triose-phosphate isomerase (EC 5.3.1.1) from Trichomonas vaginalis
PFams: TIM
252 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_CHICK / P00940 Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Gallus gallus (Chicken)
P00940 triose-phosphate isomerase (EC 5.3.1.1) from Gallus gallus
PFams: TIM
248 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_YEAST / P00942 Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
P00942 triose-phosphate isomerase (EC 5.3.1.1) from Saccharomyces cerevisiae
PFams: TIM
248 amino acids: PaperBLAST, CDD, Compare to cluster

b3919 triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli K-12 substr. MG1655
TPIS_ECODH / B1XB85 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli (strain K12 / DH10B)
TPIS_ECOLI / P0A858 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli (strain K12)
P0A858 triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
P0A858 triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli (strain K12)
RF|NP_418354 triose-phosphate isomerase from Escherichia coli K12
PFams: TIM
255 amino acids: PaperBLAST, CDD, Compare to cluster

P35144 triose-phosphate isomerase (EC 5.3.1.1) from Bacillus megaterium
PFams: TIM
251 amino acids: PaperBLAST, CDD, Compare to cluster

P36186 triose-phosphate isomerase (EC 5.3.1.1) from Giardia intestinalis
PFams: TIM
257 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_ARATH / P48491 Triosephosphate isomerase, cytosolic; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Arabidopsis thaliana (Mouse-ear cress)
P48491 triose-phosphate isomerase (EC 5.3.1.1) from Arabidopsis thaliana
PFams: TIM
254 amino acids: PaperBLAST, CDD, Compare to cluster

P52270 triose-phosphate isomerase (EC 5.3.1.1) from Trypanosoma cruzi
PFams: TIM
251 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_HELPY / P56076 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
P56076 triose-phosphate isomerase (EC 5.3.1.1) from Helicobacter pylori
PFams: TIM
234 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_HUMAN / P60174 Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Homo sapiens (Human)
P60174 triose-phosphate isomerase (EC 5.3.1.1) from Homo sapiens
P60174 Triosephosphate isomerase (EC 5.3.1.1) from Homo sapiens
PFams: TIM
286 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_MYCTU / P9WG43 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WG43 triose-phosphate isomerase (EC 5.3.1.1) from Mycobacterium tuberculosis
PFams: TIM
261 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_PLAFA / Q07412 Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Plasmodium falciparum
Q07412 triose-phosphate isomerase (EC 5.3.1.1) from Plasmodium falciparum
PFams: TIM
248 amino acids: PaperBLAST, CDD, Compare to cluster

Q0H294 triose-phosphate isomerase (EC 5.3.1.1) from Pteris vittata
PFams: TIM
253 amino acids: PaperBLAST, CDD, Compare to cluster

Q0ZAG6 triose-phosphate isomerase (EC 5.3.1.1) from Leishmania donovani
PFams: TIM
252 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_CAEEL / Q10657 Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Caenorhabditis elegans
Q10657 triose-phosphate isomerase (EC 5.3.1.1) from Caenorhabditis elegans
PFams: TIM
247 amino acids: PaperBLAST, CDD, Compare to cluster

Q5CSE7 triose-phosphate isomerase (EC 5.3.1.1) from Cryptosporidium parvum
PFams: TIM
250 amino acids: PaperBLAST, CDD, Compare to cluster

Q5S7Y5 triose-phosphate isomerase (EC 5.3.1.1) from Chlamydomonas reinhardtii
PFams: TIM
282 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_STAAR / Q6GIL6 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Staphylococcus aureus (strain MRSA252)
Q6GIL6 triose-phosphate isomerase (EC 5.3.1.1) from Staphylococcus aureus
PFams: TIM
253 amino acids: PaperBLAST, CDD, Compare to cluster

Q7NAQ4 triose-phosphate isomerase (EC 5.3.1.1) from Mycoplasma gallisepticum
PFams: TIM
252 amino acids: PaperBLAST, CDD, Compare to cluster

Q7X216 triose-phosphate isomerase (EC 5.3.1.1) from Klebsiella pneumoniae
PFams: TIM
265 amino acids: PaperBLAST, CDD, Compare to cluster

Q8MPF2 triose-phosphate isomerase (EC 5.3.1.1) from Tenebrio molitor
PFams: TIM
247 amino acids: PaperBLAST, CDD, Compare to cluster

O02611 triose-phosphate isomerase (EC 5.3.1.1) from Entamoeba histolytica
PDB|1M6J_A triosephosphate isomerase; EC 5.3.1.1 from Entamoeba histolytica
PFams: TIM
261 amino acids: PaperBLAST, CDD, Compare to cluster

GI|2143243 triosephosphate isomerase; EC 5.3.1.1 from Entamoeba histolytica
PFams: TIM
261 amino acids: PaperBLAST, CDD, Compare to cluster

CH_125123 triosephosphate isomerase; EC 5.3.1.1 from Schizosaccharomyces pombe
PFams: TIM
249 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_SCYPA / A0A1L5YRA2 Triosephosphate isomerase; TIM; Allergen Scy p 8; Methylglyoxal synthase; Triose-phosphate isomerase; Allergen Scy p 8.0101; EC 5.3.1.1; EC 4.2.3.3 from Scylla paramamosain (Mud crab)
PFams: TIM
248 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_PROCL / F5A6E9 Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; Allergen Pro c 8.0101; EC 5.3.1.1; EC 4.2.3.3 from Procambarus clarkii (Red swamp crayfish)
PFams: TIM
248 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_RABIT / P00939 Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Oryctolagus cuniculus (Rabbit)
P00939 triose-phosphate isomerase (EC 5.3.1.1) from Oryctolagus cuniculus
PFams: TIM
288 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_GEOSE / P00943 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Geobacillus stearothermophilus (Bacillus stearothermophilus)
P00943 triose-phosphate isomerase (EC 5.3.1.1) from Geobacillus stearothermophilus
PFams: TIM
253 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_TRYBB / P04789 Triosephosphate isomerase, glycosomal; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Trypanosoma brucei brucei
P04789 triose-phosphate isomerase (EC 5.3.1.1) from Trypanosoma brucei brucei
PFams: TIM
250 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_DROME / P29613 Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Drosophila melanogaster (Fruit fly)
PFams: TIM
247 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_LEIME / P48499 Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Leishmania mexicana
P48499 triose-phosphate isomerase (EC 5.3.1.1) from Leishmania mexicana
PFams: TIM
251 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_MORMI / P50921 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina (Vibrio marinus)
P50921 triose-phosphate isomerase (EC 5.3.1.1) from Moritella marina
PDB|1AW1_A triose-phosphate isomerase; EC 5.3.1.1 from Moritella marina
PFams: TIM
256 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_BACCE / Q4MQ55 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bacillus cereus
PFams: TIM
251 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_THET8 / Q5SJR1 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
PFams: TIM
250 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_BARHE / Q8L1Z5 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) (Rochalimaea henselae)
Q8L1Z5 triose-phosphate isomerase (EC 5.3.1.1) from Bartonella henselae
PFams: TIM
254 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_CLOPE / Q8XKU1 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Clostridium perfringens (strain 13 / Type A)
PFams: TIM
248 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS2_LISIN / Q92EU4 Triosephosphate isomerase 2; TIM 2; TPI 2; Triose-phosphate isomerase 2; EC 5.3.1.1 from Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
PFams: TIM
254 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_PARBA / Q96VN5 Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Paracoccidioides lutzii (strain ATCC MYA-826 / Pb01) (Paracoccidioides brasiliensis)
PFams: TIM
249 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_CANAL / Q9P940 Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Candida albicans (strain SC5314 / ATCC MYA-2876) (Yeast)
CH_123340 triosephosphate isomerase (TIM); EC 5.3.1.1 from Candida albicans
PFams: TIM
248 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_DEIRA / Q9RUP5 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
PFams: TIM
244 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_STRCO / Q9Z520 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
PFams: TIM
258 amino acids: PaperBLAST, CDD, Compare to cluster

O32757 triosephosphate isomerase subunit (EC 5.3.1.1) from Lactobacillus delbrueckii subsp. bulgaricus
PFams: TIM
252 amino acids: PaperBLAST, CDD, Compare to cluster

P50918 triosephosphate isomerase subunit (EC 5.3.1.1) from Lactococcus lactis subsp. lactis (strain IL1403)
PFams: TIM
252 amino acids: PaperBLAST, CDD, Compare to cluster

G0XRK4 tetrahydroberberine oxidase (EC 1.3.3.8) (low-coverage HMM hit) from Corydalis saxicola
G0XRK4 (S)-canadine oxidase (EC 1.3.3.8) from Corydalis saxicola
PFams: TIM
232 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 216-228 amino acids (not heteromeric)

B6YUE5 triose-phosphate isomerase (EC 5.3.1.1) from Thermococcus onnurineus
PFams: TIM, ThiG
226 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_PYRWO / P62003 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Pyrococcus woesei
P62002 triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus furiosus
P62003 triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus woesei
P62003 triose phosphate isomerase subunit (EC 5.3.1.1) from Pyrococcus woesei
PFams: TIM, ThiG
228 amino acids: PaperBLAST, CDD, Compare to cluster

Q12UK2 triose-phosphate isomerase (EC 5.3.1.1) from Methanococcoides burtonii
PFams: TIM
221 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_METJA / Q58923 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Q58923 triose-phosphate isomerase (EC 5.3.1.1) from Methanocaldococcus jannaschii
Q58923 triosephosphate isomerase monomer (EC 5.3.1.1) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
PFams: TIM
219 amino acids: PaperBLAST, CDD, Compare to cluster

Q97VM8 triose-phosphate isomerase (EC 5.3.1.1) from Saccharolobus solfataricus
PFams: TIM
227 amino acids: PaperBLAST, CDD, Compare to cluster

Q9HLB6 triose-phosphate isomerase (EC 5.3.1.1) from Thermoplasma acidophilum
PFams: TIM, IGPS
216 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_METBR / O74025 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanobacterium bryantii
O74025 triose-phosphate isomerase (EC 5.3.1.1) from Methanobacterium bryantii
PFams: TIM
226 amino acids: PaperBLAST, CDD, Compare to cluster

TPIS_THETK / Q8NKN9 Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermoproteus tenax (strain ATCC 35583 / DSM 2078 / JCM 9277 / NBRC 100435 / Kra 1)
Q8NKN9 triose-phosphate isomerase (EC 5.3.1.1) from Thermoproteus tenax
PFams: TIM, ThiG
226 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

PGKT_THEMA / P36204 Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
P36204 triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima
P36204 Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: PGK, TIM
654 amino acids: PaperBLAST, CDD