GapMind for catabolism of small carbon sources


Other Characterized Proteins Similar to aapM

Finding the characterized proteins for aapM (L-histidine ABC transporter, permease component 2 (AapM)) in L-histidine catabolism

Or see clustering for step aapM

Or see all steps for L-histidine catabolism

Or cluster curated proteins matching a keyword

Definition of aapM

Fetched 2 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 2 other characterized sequences. (Found 4 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for aapM.)

Pf6N2E2_5404 ABC transporter for D-Alanine, permease component 1 from Pseudomonas fluorescens FW300-N2E2
PFams: BPD_transp_1
Heteromeric, 365 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_5404
55% identical to

SMc02120 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, permease component 2 from Sinorhizobium meliloti 1021
PFams: BPD_transp_1
Heteromeric, 384 amino acids: PaperBLAST, CDD

TC 3.A.1.3.7 / Q52665 BztC, component of Glutamate/glutamine/aspartate/asparagine porter from Rhodobacter capsulatus (Rhodopseudomonas capsulata)
PFams: BPD_transp_1
Heteromeric, 434 amino acids: PaperBLAST, CDD, TCDB::Q52665
40% identical to

TC 3.A.1.3.8 / Q52814 AapM, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) from Rhizobium leguminosarum (biovar viciae)
PFams: BPD_transp_1
Heteromeric, 384 amino acids: PaperBLAST, CDD