Clusters of Characterized Proteins

Clustering the characterized proteins for aapM (L-histidine ABC transporter, permease component 2 (AapM)) in L-histidine catabolism

Or see other characterized proteins similar to aapM

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Definition of aapM

• Curated sequence SMc02120: ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, permease component 2
• Curated sequence Q52814: AapM, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux)

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 384-384 amino acids (heteromeric)

TC 3.A.1.3.8 / Q52814 AapM, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) from Rhizobium leguminosarum (biovar viciae)
PFams: BPD_transp_1
Heteromeric, 384 amino acids: PaperBLAST, CDD, Compare to cluster

SMc02120 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, permease component 2 from Sinorhizobium meliloti 1021
PFams: BPD_transp_1
Heteromeric, 384 amino acids: PaperBLAST, CDD, Compare to cluster