GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for aapQ (L-histidine ABC transporter, permease component 1 (AapQ)) in L-histidine catabolism

Or see other characterized proteins similar to aapQ

Or see all steps for L-histidine catabolism

Or cluster curated proteins matching a keyword

Definition of aapQ

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 397-400 amino acids (heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.3.8 / Q52813 AapQ, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) from Rhizobium leguminosarum (biovar viciae)
PFams: BPD_transp_1
Heteromeric, 400 amino acids: PaperBLAST, CDD, Compare to cluster

SMc02119 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, permease component 1 from Sinorhizobium meliloti 1021
PFams: BPD_transp_1
Heteromeric, 397 amino acids: PaperBLAST, CDD, Compare to cluster