GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for bkdB (branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit) in L-isoleucine catabolism

Or see other characterized proteins similar to bkdB

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Or cluster curated proteins matching a keyword

Definition of bkdB

Fetched 12 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 12 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 319-392 amino acids (6/12 heteromeric)

The first sequence in each cluster is the seed.

Q9HIA4 branched-chain-2-oxoacid decarboxylase (subunit 2/2) (EC 4.1.1.72) from Thermoplasma acidophilum
PFams: Transket_pyr, Transketolase_C
Heteromeric, 319 amino acids: PaperBLAST, CDD, Compare to cluster

GI|790516 2-oxoisovalerate dehydrogenase subunit beta; EC 1.2.4.4 from Pseudomonas putida
PFams: Transket_pyr, Transketolase_C
339 amino acids: PaperBLAST, CDD, Compare to cluster

ODBB_HUMAN / P21953 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial; Branched-chain alpha-keto acid dehydrogenase E1 component beta chain; BCKDE1B; BCKDH E1-beta; EC 1.2.4.4 from Homo sapiens (Human)
P21953 branched-chain α-keto acid dehydrogenase E1 component β subunit (EC 1.2.4.4) from Homo sapiens
PFams: Transket_pyr, Transketolase_C
Heteromeric, 392 amino acids: PaperBLAST, CDD, Compare to cluster

BKDB_MYCTU / P9WIS1 3-methyl-2-oxobutanoate dehydrogenase subunit beta; Branched-chain alpha-ketoacid dehydrogenase E1 component subunit beta; BCKADH E1-beta; EC 1.2.4.4 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
PFams: Transket_pyr, Transketolase_C
Heteromeric, 348 amino acids: PaperBLAST, CDD, Compare to cluster

ODBB_THET8 / Q5SLR3 2-oxoisovalerate dehydrogenase subunit beta; Branched-chain alpha-keto acid dehydrogenase E1 component beta chain; BCKDH E1-beta; EC 1.2.4.4 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
PFams: Transket_pyr, Transketolase_C
Heteromeric, 324 amino acids: PaperBLAST, CDD, Compare to cluster

ODBB2_ARATH / Q9LDY2 2-oxoisovalerate dehydrogenase subunit beta 2, mitochondrial; Branched-chain alpha-keto acid dehydrogenase E1 component beta chain; BCKDE1B; BCKDH E1-beta; Protein DARK INDUCIBLE 4; EC 1.2.4.4 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Transket_pyr, Transketolase_C
Heteromeric, 358 amino acids: PaperBLAST, CDD, Compare to cluster

P37941 2-keto-isovalerate dehydrogenase component β subunit (EC 1.2.4.4) from Bacillus subtilis (strain 168)
PFams: Transket_pyr, Transketolase_C
Heteromeric, 327 amino acids: PaperBLAST, CDD, Compare to cluster

SMc03202 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) from Sinorhizobium meliloti 1021
PFams: Transket_pyr, Transketolase_C
337 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_17550 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) from Pseudomonas simiae WCS417
PFams: Transket_pyr, Transketolase_C
352 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_3541 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) from Pseudomonas fluorescens GW456-L13
PFams: Transket_pyr, Transketolase_C
352 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_22985 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) from Pseudomonas fluorescens FW300-N2C3
PFams: Transket_pyr, Transketolase_C
352 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_480 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) from Pseudomonas fluorescens FW300-N2E2
PFams: Transket_pyr, Transketolase_C
352 amino acids: PaperBLAST, CDD, Compare to cluster