GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to bkdB

Finding the characterized proteins for bkdB (branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit) in L-isoleucine catabolism

Or see clustering for step bkdB

Or see all steps for L-isoleucine catabolism

Or cluster curated proteins matching a keyword

Definition of bkdB

Fetched 12 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 14 other characterized sequences. (Found 26 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for bkdB.)

P21874 pyruvate dehydrogenase (acetyl-transferring) (EC 1.2.4.1) from Geobacillus stearothermophilus
PFams: Transket_pyr, Transketolase_C
325 amino acids: PaperBLAST, CDD, BRENDA::P21874
51% identical to

ODBB_THET8 / Q5SLR3 2-oxoisovalerate dehydrogenase subunit beta; Branched-chain alpha-keto acid dehydrogenase E1 component beta chain; BCKDH E1-beta; EC 1.2.4.4 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
PFams: Transket_pyr, Transketolase_C
Heteromeric, 324 amino acids: PaperBLAST, CDD

ODPB_STAAU / P0A0A3 Pyruvate dehydrogenase E1 component subunit beta; EC 1.2.4.1 from Staphylococcus aureus
PFams: Transket_pyr, Transketolase_C
Heteromeric, 325 amino acids: PaperBLAST, CDD, SwissProt::P0A0A3
51% identical to

Q9HIA4 branched-chain-2-oxoacid decarboxylase (subunit 2/2) (EC 4.1.1.72) from Thermoplasma acidophilum
PFams: Transket_pyr, Transketolase_C
Heteromeric, 319 amino acids: PaperBLAST, CDD

P75391 β subunit (EC 1.2.4.1) from Mycoplasma pneumoniae (strain ATCC 29342 / M129)
PFams: Transket_pyr, Transketolase_C
Heteromeric, 327 amino acids: PaperBLAST, CDD, metacyc::MONOMER-587
47% identical to

Q9HIA4 branched-chain-2-oxoacid decarboxylase (subunit 2/2) (EC 4.1.1.72) from Thermoplasma acidophilum
PFams: Transket_pyr, Transketolase_C
Heteromeric, 319 amino acids: PaperBLAST, CDD

Q46143 acetoin dehydrogenase (EC 2.3.1.190) from Clostridium magnum
CH_006551 TPP-dependent acetoin dehydrogenase complex, E1 component, beta subunit; EC 1.1.1.- from Clostridium magnum
PFams: Transket_pyr, Transketolase_C, PFOR_II
333 amino acids: PaperBLAST, CDD, CharProtDB::CH_006551
48% identical to

P37941 2-keto-isovalerate dehydrogenase component β subunit (EC 1.2.4.4) from Bacillus subtilis (strain 168)
PFams: Transket_pyr, Transketolase_C
Heteromeric, 327 amino acids: PaperBLAST, CDD

P27746 acetoin dehydrogenase (EC 2.3.1.190) from Alcaligenes eutrophus H16
PFams: Transket_pyr, Transketolase_C
338 amino acids: PaperBLAST, CDD, BRENDA::P27746
45% identical to

Q9HIA4 branched-chain-2-oxoacid decarboxylase (subunit 2/2) (EC 4.1.1.72) from Thermoplasma acidophilum
PFams: Transket_pyr, Transketolase_C
Heteromeric, 319 amino acids: PaperBLAST, CDD

Q3A7P0 acetoin:DCPIP oxidoreductase β subunit from Pelobacter carbinolicus (strain DSM 2380 / NBRC 103641 / GraBd1)
PFams: Transket_pyr, Transketolase_C
337 amino acids: PaperBLAST, CDD, metacyc::MONOMER-14176
45% identical to

Q9HIA4 branched-chain-2-oxoacid decarboxylase (subunit 2/2) (EC 4.1.1.72) from Thermoplasma acidophilum
PFams: Transket_pyr, Transketolase_C
Heteromeric, 319 amino acids: PaperBLAST, CDD

Q1KSF0 pyruvate dehydrogenase (acetyl-transferring) (EC 1.2.4.1) from Toxoplasma gondii
PFams: Transket_pyr, Transketolase_C
470 amino acids: PaperBLAST, CDD, BRENDA::Q1KSF0
45% identical to

P37941 2-keto-isovalerate dehydrogenase component β subunit (EC 1.2.4.4) from Bacillus subtilis (strain 168)
PFams: Transket_pyr, Transketolase_C
Heteromeric, 327 amino acids: PaperBLAST, CDD

ODPB1_ARATH / Q38799 Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; PDHE1-B; Protein MACCI-BOU; EC 1.2.4.1 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Transket_pyr, Transketolase_C
363 amino acids: PaperBLAST, CDD, SwissProt::Q38799
43% identical to

ODBB_THET8 / Q5SLR3 2-oxoisovalerate dehydrogenase subunit beta; Branched-chain alpha-keto acid dehydrogenase E1 component beta chain; BCKDH E1-beta; EC 1.2.4.4 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
PFams: Transket_pyr, Transketolase_C
Heteromeric, 324 amino acids: PaperBLAST, CDD

Q52015 acetoin dehydrogenase (EC 2.3.1.190) from Pseudomonas putida
PFams: Transket_pyr, Transketolase_C
340 amino acids: PaperBLAST, CDD, BRENDA::Q52015
42% identical to

Q9HIA4 branched-chain-2-oxoacid decarboxylase (subunit 2/2) (EC 4.1.1.72) from Thermoplasma acidophilum
PFams: Transket_pyr, Transketolase_C
Heteromeric, 319 amino acids: PaperBLAST, CDD

Q97YF5 acetoin dehydrogenase (EC 2.3.1.190) from Saccharolobus solfataricus
PFams: Transket_pyr, Transketolase_C
332 amino acids: PaperBLAST, CDD, BRENDA::Q97YF5
41% identical to

P37941 2-keto-isovalerate dehydrogenase component β subunit (EC 1.2.4.4) from Bacillus subtilis (strain 168)
PFams: Transket_pyr, Transketolase_C
Heteromeric, 327 amino acids: PaperBLAST, CDD

ODPB_HUMAN / P11177 Pyruvate dehydrogenase E1 component subunit beta, mitochondrial; PDHE1-B; EC 1.2.4.1 from Homo sapiens (Human)
P11177 pyruvate dehydrogenase E1 component β subunit from Homo sapiens
PFams: Transket_pyr, Transketolase_C
Heteromeric, 359 amino acids: PaperBLAST, CDD, SwissProt::P11177
41% identical to

Q9HIA4 branched-chain-2-oxoacid decarboxylase (subunit 2/2) (EC 4.1.1.72) from Thermoplasma acidophilum
PFams: Transket_pyr, Transketolase_C
Heteromeric, 319 amino acids: PaperBLAST, CDD

RF|NP_596272.1 pyruvate dehydrogenase e1 component beta subunit Pdb1; EC 1.2.4.1 from Schizosaccharomyces pombe
PFams: Transket_pyr, Transketolase_C
366 amino acids: PaperBLAST, CDD, CharProtDB::CH_125496
41% identical to

P37941 2-keto-isovalerate dehydrogenase component β subunit (EC 1.2.4.4) from Bacillus subtilis (strain 168)
PFams: Transket_pyr, Transketolase_C
Heteromeric, 327 amino acids: PaperBLAST, CDD

CH_122545 pyruvate dehydrogenase (lipoamide) from Emericella nidulans
PFams: Transket_pyr, Transketolase_C
364 amino acids: PaperBLAST, CDD, CharProtDB::CH_122545
40% identical to

ODBB_THET8 / Q5SLR3 2-oxoisovalerate dehydrogenase subunit beta; Branched-chain alpha-keto acid dehydrogenase E1 component beta chain; BCKDH E1-beta; EC 1.2.4.4 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
PFams: Transket_pyr, Transketolase_C
Heteromeric, 324 amino acids: PaperBLAST, CDD

P26269 pyruvate dehydrogenase β subunit (EC 1.2.4.1) from Ascaris suum
PFams: Transket_pyr, Transketolase_C
Heteromeric, 361 amino acids: PaperBLAST, CDD, metacyc::MONOMER-18300
40% identical to

PfGW456L13_3541 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) from Pseudomonas fluorescens GW456-L13
PFams: Transket_pyr, Transketolase_C
352 amino acids: PaperBLAST, CDD