GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to lpd

Finding the characterized proteins for lpd (branched-chain alpha-ketoacid dehydrogenase, E3 component) in L-isoleucine catabolism

Or see clustering for step lpd

Or see all steps for L-isoleucine catabolism

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Definition of lpd

Fetched 48 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 7 other characterized sequences. (Found 55 hits including self hits.)

There are also 3 HMM-only high-coverage hits.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for lpd.)

T1RLH3 mercury(II) reductase (EC 1.16.1.1) from Flavobacterium sp. SOK62
PFams: HMA, Pyr_redox_2, GIDA, Pyr_redox_3, Pyr_redox, Pyr_redox_dim
552 amino acids: PaperBLAST, CDD, BRENDA::T1RLH3
53% identical to

DLDH_HYMDI / P80647 Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta (Rat tapeworm)
PFams: Pyr_redox_2, FAD_binding_2, FAD_oxidored, GIDA
53 amino acids: PaperBLAST, CDD

b3962 soluble pyridine nucleotide transhydrogenase (EC 1.6.1.2; EC 1.6.1.3; EC 1.6.1.1) from Escherichia coli K-12 substr. MG1655
P27306 NAD(P)+ transhydrogenase (Si-specific) (EC 1.6.1.1) from Escherichia coli
P27306 soluble pyridine nucleotide transhydrogenase (EC 1.6.1.2) from Escherichia coli (strain K12)
PFams: Pyr_redox_2, FAD_binding_2, Pyr_redox, Pyr_redox_dim
466 amino acids: PaperBLAST, CDD, BRENDA::P27306
47% identical to

DLDH_HYMDI / P80647 Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta (Rat tapeworm)
PFams: Pyr_redox_2, FAD_binding_2, FAD_oxidored, GIDA
53 amino acids: PaperBLAST, CDD

A8UT36 mercury(II) reductase (EC 1.16.1.1) from Hydrogenivirga sp. 128-5-R1-1
PFams: HMA, Pyr_redox_2, Pyr_redox, Pyr_redox_dim
544 amino acids: PaperBLAST, CDD, BRENDA::A8UT36
51% identical to

DLDH_HYMDI / P80647 Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta (Rat tapeworm)
PFams: Pyr_redox_2, FAD_binding_2, FAD_oxidored, GIDA
53 amino acids: PaperBLAST, CDD

IRC15_YEAST / Q02733 Increased recombination centers protein 15 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: Pyr_redox_2, FAD_binding_2, FAD_oxidored, Pyr_redox, Pyr_redox_dim
499 amino acids: PaperBLAST, CDD, SwissProt::Q02733
48% identical to

DLDH_HYMDI / P80647 Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta (Rat tapeworm)
PFams: Pyr_redox_2, FAD_binding_2, FAD_oxidored, GIDA
53 amino acids: PaperBLAST, CDD

RF|NP_595589.1 glutathione reductase from Schizosaccharomyces pombe
PFams: FAD_binding_2, FAD_oxidored, Pyr_redox_2, GIDA, NAD_binding_8, Pyr_redox_3, Pyr_redox, Pyr_redox_dim
464 amino acids: PaperBLAST, CDD, CharProtDB::CH_125411
46% identical to

DLDH_HYMDI / P80647 Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta (Rat tapeworm)
PFams: Pyr_redox_2, FAD_binding_2, FAD_oxidored, GIDA
53 amino acids: PaperBLAST, CDD

STHA_AZOVI / Q9XBQ9 Soluble pyridine nucleotide transhydrogenase; STH; NAD(P)(+) transhydrogenase [B-specific]; EC 1.6.1.1 from Azotobacter vinelandii
PFams: Pyr_redox_2, FAD_binding_2, FAD_oxidored, NAD_binding_8, Pyr_redox, Pyr_redox_dim
464 amino acids: PaperBLAST, CDD, SwissProt::Q9XBQ9
44% identical to

DLDH_HYMDI / P80647 Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta (Rat tapeworm)
PFams: Pyr_redox_2, FAD_binding_2, FAD_oxidored, GIDA
53 amino acids: PaperBLAST, CDD

C6GCU2 3-oxosteroid 1-dehydrogenase (EC 1.3.99.4) from Rhodococcus ruber
PFams: HI0933_like, Pyr_redox_2, DAO, FAD_binding_2, FAD_oxidored, NAD_binding_8
570 amino acids: PaperBLAST, CDD, BRENDA::C6GCU2
47% identical to

DLDH_HYMDI / P80647 Dihydrolipoyl dehydrogenase; Dihydrolipoamide dehydrogenase; EC 1.8.1.4 from Hymenolepis diminuta (Rat tapeworm)
PFams: Pyr_redox_2, FAD_binding_2, FAD_oxidored, GIDA
53 amino acids: PaperBLAST, CDD

HMM-only sequences

(Since these sequences' annotations are outside the definition for lpd, HMM hits that are over 40% similar to these sequences will be scored as moderate confidence.)

LEGRE_VIGUN / Q9SPB1 Leghemoglobin reductase; Ferric leghemoglobin reductase; FLbR; EC 1.6.2.6 from Vigna unguiculata (Cowpea)
PFams: FAD_binding_2, FAD_oxidored, GIDA, Pyr_redox_2, NAD_binding_8, Pyr_redox_3, Pyr_redox, Pyr_redox_dim
523 amino acids: PaperBLAST, CDD

O81413 leghemoglobin reductase (EC 1.6.2.6) from Glycine max
PFams: FAD_binding_2, FAD_oxidored, GIDA, Pyr_redox_2, Pyr_redox_3, NAD_binding_8, Pyr_redox, Pyr_redox_dim
500 amino acids: PaperBLAST, CDD

LEGRE_SOYBN / Q41219 Leghemoglobin reductase; Ferric leghemoglobin reductase; FLbR; EC 1.6.2.6 from Glycine max (Soybean) (Glycine hispida)
PFams: FAD_binding_2, FAD_oxidored, GIDA, Pyr_redox_2, NAD_binding_8, Pyr_redox_3, Pyr_redox, UDPG_MGDP_dh_N, Pyr_redox_dim
523 amino acids: PaperBLAST, CDD