GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to natD

Finding the characterized proteins for natD (L-isoleucine ABC transporter, permease component 2 (NatD)) in L-isoleucine catabolism

Or see clustering for step natD

Or see all steps for L-isoleucine catabolism

Or cluster curated proteins matching a keyword

Definition of natD

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 1 other characterized sequences. (Found 2 hits including self hits.)

Removing ignored items reduces this to 0 close sequences.

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for natD.)

TC 3.A.1.4.2 / P74318 NatD aka LivH aka SLR0949, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE
PFams: BPD_transp_2
Heteromeric, 286 amino acids: PaperBLAST, CDD, TCDB::P74318
68% identical to

TC 3.A.1.4.6 / Q8YXD0 NatD, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB)
PFams: BPD_transp_2
Heteromeric, 288 amino acids: PaperBLAST, CDD