Other Characterized Proteins Similar to dgoD

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to dgoD

Finding the characterized proteins for dgoD (D-galactonate dehydratase) in lactose catabolism

Or see clustering for step dgoD

Or see all steps for lactose catabolism

Or cluster curated proteins matching a keyword

Definition of dgoD

Curated proteins or TIGRFams with EC 4.2.1.6
Curated proteins or TIGRFams with EC 4.2.1.140

Fetched 7 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 18 other characterized sequences. (Found 25 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for dgoD.)

SM_b20890 L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti 1021
PFams: ILVD_EDD
579 amino acids: PaperBLAST, CDD, reanno::Smeli:SM_b20890
75% identical to

ARAD_RHILW / B5ZZ34 L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum bv. trifolii (strain WSM2304)
I9XDU6 L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum bv. trifolii
PFams: ILVD_EDD
579 amino acids: PaperBLAST, CDD

BPHYT_RS19730 L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans PsJN
PFams: ILVD_EDD
577 amino acids: PaperBLAST, CDD, reanno::BFirm:BPHYT_RS19730
66% identical to

ARADA_AZOBR / Q1JUQ1 L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense
PFams: ILVD_EDD
583 amino acids: PaperBLAST, CDD, SwissProt::Q1JUQ1
64% identical to

PS417_11000 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas simiae WCS417
PFams: ILVD_EDD
578 amino acids: PaperBLAST, CDD, reanno::WCS417:GFF2156
65% identical to

HSERO_RS05205 L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae SmR1
PFams: ILVD_EDD
585 amino acids: PaperBLAST, CDD, reanno::HerbieS:HSERO_RS05205
64% identical to

Pf6N2E2_609 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens FW300-N2E2
PFams: ILVD_EDD
578 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_609
64% identical to

AO356_24585 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens FW300-N2C3
PFams: ILVD_EDD
578 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_24585
64% identical to

PfGW456L13_3320 L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens GW456-L13
PFams: ILVD_EDD
578 amino acids: PaperBLAST, CDD, reanno::pseudo13_GW456_L13:PfGW456L13_3320
64% identical to

Shewana3_2070 L-arabonate dehydratase (EC 4.2.1.25) from Shewanella sp. ANA-3
PFams: ILVD_EDD
586 amino acids: PaperBLAST, CDD, reanno::ANA3:7024896
63% identical to

Q97VG1 D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
PFams: MR_MLE_N, MR_MLE_C
393 amino acids: PaperBLAST, CDD, metacyc::MONOMER-18070
62% identical to

GAD_SACS2 / Q97U27 D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus)
Q97U27 gluconate/galactonate dehydratase (EC 4.2.1.140) from Saccharolobus solfataricus
PFams: MR_MLE_N, MR_MLE_C
395 amino acids: PaperBLAST, CDD

ILVD1_RHIME / Q92RP0 Putative dehydratase IlvD1; EC 4.2.1.- from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
PFams: ILVD_EDD
574 amino acids: PaperBLAST, CDD, SwissProt::Q92RP0
60% identical to

GAD_THETE / Q704D2 D-gluconate dehydratase; EC 4.2.1.39 from Thermoproteus tenax
PFams: MR_MLE_N, MR_MLE_C
497 amino acids: PaperBLAST, CDD, SwissProt::Q704D2
59% identical to

G4RJQ1 gluconate dehydratase (EC 4.2.1.39) from Thermoproteus tenax
PFams: MR_MLE_N, MR_MLE_C
391 amino acids: PaperBLAST, CDD, BRENDA::G4RJQ1
59% identical to

SGD_PSEPU / P0DOV7 6-deoxy-6-sulfo-D-gluconate dehydratase; SG dehydratase; EC 4.2.1.162 from Pseudomonas putida (Arthrobacter siderocapsulatus)
PFams: ILVD_EDD
579 amino acids: PaperBLAST, CDD, SwissProt::P0DOV7
45% identical to

AO356_28760 Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens FW300-N2C3
PFams: ILVD_EDD
594 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_28760
46% identical to

Pf6N2E2_1668 Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens FW300-N2E2
PFams: ILVD_EDD
594 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_1668
45% identical to

XYLD_CAUVC / Q9A9Z2 D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides (strain ATCC 19089 / CB15) (Caulobacter crescentus)
Q9A9Z2 xylonate dehydratase (EC 4.2.1.82) from Caulobacter vibrioides
PFams: ILVD_EDD
595 amino acids: PaperBLAST, CDD, BRENDA::Q9A9Z2
42% identical to

CCNA_00862 Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus NA1000
A0A0H3C6H6 xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides (strain NA1000 / CB15N)
PFams: ILVD_EDD
591 amino acids: PaperBLAST, CDD, metacyc::MONOMER-20629
42% identical to