GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to galdh

Finding the characterized proteins for galdh (D-galactose 1-dehydrogenase (forming 1,4- or 1,5-lactones)) in lactose catabolism

Or see clustering for step galdh

Or see all steps for lactose catabolism

Or cluster curated proteins matching a keyword

Definition of galdh

Fetched 13 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 9 other characterized sequences. (Found 22 hits including self hits.)

Removing ignored items reduces this to 6 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for galdh.)

Ga0059261_1894 D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis DSMZ 15582
PFams: adh_short, Epimerase, adh_short_C2
259 amino acids: PaperBLAST, CDD, reanno::Korea:Ga0059261_1894
46% identical to

BPHYT_RS16920 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans PsJN
PFams: KR, adh_short, Epimerase, adh_short_C2
266 amino acids: PaperBLAST, CDD

XDH_CAUVN / B8H1Z0 D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides (strain NA1000 / CB15N) (Caulobacter crescentus)
B8H1Z0 D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides
CCNA_00864 D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus NA1000
PFams: adh_short, adh_short_C2
248 amino acids: PaperBLAST, CDD, BRENDA::B8H1Z0
46% identical to

GALD_RHIME / Q92RN6 Probable galactose dehydrogenase GalD; EC 1.1.1.- from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
PFams: Epimerase, KR, adh_short, adh_short_C2
256 amino acids: PaperBLAST, CDD

SQD_PSEPU / P0DOV5 Sulfoquinovose 1-dehydrogenase; SQ dehydrogenase; EC 1.1.1.390 from Pseudomonas putida (Arthrobacter siderocapsulatus)
P0DOV5 sulfoquinovose 1-dehydrogenase (EC 1.1.1.390) from Pseudomonas putida
PFams: adh_short, KR, adh_short_C2
260 amino acids: PaperBLAST, CDD, SwissProt::P0DOV5
49% identical to

BPHYT_RS16920 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans PsJN
PFams: KR, adh_short, Epimerase, adh_short_C2
266 amino acids: PaperBLAST, CDD

Q96ZY7 glucose 1-dehydrogenase (NADP+) (EC 1.1.1.119) from Sulfurisphaera tokodaii
PFams: ADH_N, Glu_dehyd_C
360 amino acids: PaperBLAST, CDD, BRENDA::Q96ZY7
44% identical to

Q979W2 glucose/galactose 1-dehydrogenase (EC 1.1.1.360) from Thermoplasma volcanium
PFams: ADH_N, Glu_dehyd_C
361 amino acids: PaperBLAST, CDD

Q97U21 glucose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.47) from Saccharolobus solfataricus
PFams: ADH_N, Glu_dehyd_C
360 amino acids: PaperBLAST, CDD, BRENDA::Q97U21
41% identical to

GLCDH_SACSO / O93715 Glucose 1-dehydrogenase; GDH; GlcDH; Aldose 1-dehydrogenase [NAD(P)(+)]; Galactose 1-dehydrogenase; EC 1.1.1.47; EC 1.1.1.359; EC 1.1.1.120; EC 1.1.1.48 from Saccharolobus solfataricus (Sulfolobus solfataricus)
O93715 aldose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.359) from Saccharolobus solfataricus
Q7LYI9 aldose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.359) from Saccharolobus solfataricus
O93715 aldose 1-dehydrogenase subunit (EC 1.1.1.376; EC 1.1.1.359; EC 1.1.1.119) from Saccharolobus solfataricus
PFams: ADH_N, Glu_dehyd_C
366 amino acids: PaperBLAST, CDD

B0L7F4 5-chloro-5-deoxy-D-ribose 1-dehydrogenase from Salinispora tropica
PFams: adh_short, KR, adh_short_C2
255 amino acids: PaperBLAST, CDD, metacyc::MONOMER-15878
40% identical to

Pf6N2E2_5967 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens FW300-N2E2
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for galdh.)

AO356_20240 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens FW300-N2C3
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_20240
95% identical to

Pf6N2E2_5967 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens FW300-N2E2
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD

HSERO_RS05210 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae SmR1
PFams: adh_short, Epimerase, adh_short_C2
261 amino acids: PaperBLAST, CDD, reanno::HerbieS:HSERO_RS05210
64% identical to

Ac3H11_614 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp. GW101-3H11
PFams: adh_short, adh_short_C2
280 amino acids: PaperBLAST, CDD

Shewana3_2071 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp. ANA-3
PFams: adh_short, KR, adh_short_C2
256 amino acids: PaperBLAST, CDD, reanno::ANA3:7024897
51% identical to

BPHYT_RS16920 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans PsJN
PFams: KR, adh_short, Epimerase, adh_short_C2
266 amino acids: PaperBLAST, CDD