Other Characterized Proteins Similar to galdh

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to galdh

Finding the characterized proteins for galdh (D-galactose 1-dehydrogenase (forming 1,4- or 1,5-lactones)) in lactose catabolism

Or see clustering for step galdh

Or see all steps for lactose catabolism

Or cluster curated proteins matching a keyword

Definition of galdh

Curated proteins or TIGRFams with EC 1.1.1.48
Curated proteins or TIGRFams with EC 1.1.1.360
Ignore hits to items matching 1.1.1.46 when looking for 'other' hits
Curated sequence Q92RN6: Probable galactose dehydrogenase GalD; EC 1.1.1.-
Comment: Some L-arabinose dehydrogenases (EC 1.1.1.46) are bifunctional. Q92RN6 is annotated as a probable galactose dehydrogenase, and mutants are defective in utilization, but was not given this EC number.

Fetched 13 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 9 other characterized sequences. (Found 22 hits including self hits.)

Removing ignored items reduces this to 6 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for galdh.)

Ga0059261_1894 D-xylose 1-dehydrogenase (EC 1.1.1.175) from Sphingomonas koreensis DSMZ 15582
PFams: adh_short, Epimerase, adh_short_C2
259 amino acids: PaperBLAST, CDD, reanno::Korea:Ga0059261_1894
46% identical to

BPHYT_RS16920 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans PsJN
PFams: KR, adh_short, Epimerase, adh_short_C2
266 amino acids: PaperBLAST, CDD

CCNA_00864 D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter crescentus NA1000
XDH_CAUVN / B8H1Z0 D-xylose 1-dehydrogenase; XDH; EC 1.1.1.175 from Caulobacter vibrioides (strain NA1000 / CB15N) (Caulobacter crescentus)
B8H1Z0 D-xylose 1-dehydrogenase (EC 1.1.1.175) from Caulobacter vibrioides
PFams: adh_short, adh_short_C2
248 amino acids: PaperBLAST, CDD, BRENDA::B8H1Z0
46% identical to

GALD_RHIME / Q92RN6 Probable galactose dehydrogenase GalD; EC 1.1.1.- from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
PFams: Epimerase, KR, adh_short, adh_short_C2
256 amino acids: PaperBLAST, CDD

SQD_PSEPU / P0DOV5 Sulfoquinovose 1-dehydrogenase; SQ dehydrogenase; EC 1.1.1.390 from Pseudomonas putida (Arthrobacter siderocapsulatus)
P0DOV5 sulfoquinovose 1-dehydrogenase (EC 1.1.1.390) from Pseudomonas putida
PFams: adh_short, KR, adh_short_C2
260 amino acids: PaperBLAST, CDD, SwissProt::P0DOV5
49% identical to

Q96ZY7 glucose 1-dehydrogenase (NADP+) (EC 1.1.1.119) from Sulfurisphaera tokodaii
PFams: ADH_N, Glu_dehyd_C
360 amino acids: PaperBLAST, CDD, BRENDA::Q96ZY7
44% identical to

Q979W2 glucose/galactose 1-dehydrogenase (EC 1.1.1.360) from Thermoplasma volcanium
PFams: ADH_N, Glu_dehyd_C
361 amino acids: PaperBLAST, CDD

Q97U21 glucose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.47) from Saccharolobus solfataricus
PFams: ADH_N, Glu_dehyd_C
360 amino acids: PaperBLAST, CDD, BRENDA::Q97U21
41% identical to

O93715 aldose 1-dehydrogenase subunit (EC 1.1.1.376; EC 1.1.1.359; EC 1.1.1.119) from Saccharolobus solfataricus
GLCDH_SACSO / O93715 Glucose 1-dehydrogenase; GDH; GlcDH; Aldose 1-dehydrogenase [NAD(P)(+)]; Galactose 1-dehydrogenase; EC 1.1.1.47; EC 1.1.1.359; EC 1.1.1.120; EC 1.1.1.48 from Saccharolobus solfataricus (Sulfolobus solfataricus)
O93715 aldose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.359) from Saccharolobus solfataricus
Q7LYI9 aldose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.359) from Saccharolobus solfataricus
PFams: ADH_N, Glu_dehyd_C
366 amino acids: PaperBLAST, CDD

B0L7F4 5-chloro-5-deoxy-D-ribose 1-dehydrogenase from Salinispora tropica
PFams: adh_short, KR, adh_short_C2
255 amino acids: PaperBLAST, CDD, metacyc::MONOMER-15878
40% identical to

Pf1N1B4_412 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens FW300-N1B4
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for galdh.)

AO356_20240 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens FW300-N2C3
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_20240
95% identical to

Pf6N2E2_5967 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens FW300-N2E2
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD

HSERO_RS05210 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae SmR1
PFams: adh_short, Epimerase, adh_short_C2
261 amino acids: PaperBLAST, CDD, reanno::HerbieS:HSERO_RS05210
64% identical to

Ac3H11_614 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp. GW101-3H11
PFams: adh_short, adh_short_C2
280 amino acids: PaperBLAST, CDD

Shewana3_2071 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp. ANA-3
PFams: adh_short, KR, adh_short_C2
256 amino acids: PaperBLAST, CDD, reanno::ANA3:7024897
51% identical to