GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for galdh (D-galactose 1-dehydrogenase (forming 1,4- or 1,5-lactones)) in lactose catabolism

Or see other characterized proteins similar to galdh

Or see all steps for lactose catabolism

Or cluster curated proteins matching a keyword

Definition of galdh

Fetched 13 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 13 of these sequences

Found 3 clusters of similar sequences. Download as table or as draft rules or view by cluster

Acidovorax GW101-3H11

Ac3H11_614 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp. GW101-3H11
PFams: adh_short, adh_short_C2
280 amino acids: PaperBLAST, CDD (Cluster 1)

Azospirillum brasilense

ARAA_AZOBR / Q53TZ2 L-arabinose 1-dehydrogenase (NAD(P)(+)); D-galactose 1-dehydrogenase; EC 1.1.1.376; EC 1.1.1.120; EC 1.1.1.48 from Azospirillum brasilense
Q53TZ2 L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376) from Azospirillum brasilense
PFams: GFO_IDH_MocA
309 amino acids: PaperBLAST, CDD (Cluster 3)

Burkholderia phytofirmans

BPHYT_RS16920 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans PsJN
PFams: KR, adh_short, Epimerase, adh_short_C2
266 amino acids: PaperBLAST, CDD (Cluster 1)

Picrophilus torridus

GLCD2_PICTO / Q6L047 Glucose/galactose 1-dehydrogenase; Galactose 1-dehydrogenase [NADP(+)]; Glucose 1-dehydrogenase 2; GDH 2; GlcDH 2; EC 1.1.1.360 from Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
PFams: ADH_N, Glu_dehyd_C
359 amino acids: PaperBLAST, CDD (Cluster 2)

Pseudomonas fluorescens

GAL_PSEFL / P11886 Galactose 1-dehydrogenase; EC 1.1.1.48 from Pseudomonas fluorescens
P11886 D-galactose dehydrogenase subunit (EC 1.1.1.48) from Pseudomonas fluorescens
PFams: GFO_IDH_MocA
304 amino acids: PaperBLAST, CDD (Cluster 3)

PfGW456L13_2119 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens GW456-L13
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD (Cluster 1)

Pf1N1B4_412 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens FW300-N1B4
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD (Cluster 1)

Pf6N2E2_5967 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens FW300-N2E2
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD (Cluster 1)

Rhizobium meliloti

GALD_RHIME / Q92RN6 Probable galactose dehydrogenase GalD; EC 1.1.1.- from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
PFams: Epimerase, KR, adh_short, adh_short_C2
256 amino acids: PaperBLAST, CDD (Cluster 1)

Saccharolobus solfataricus

GLCDH_SACSO / O93715 Glucose 1-dehydrogenase; GDH; GlcDH; Aldose 1-dehydrogenase [NAD(P)(+)]; Galactose 1-dehydrogenase; EC 1.1.1.47; EC 1.1.1.359; EC 1.1.1.120; EC 1.1.1.48 from Saccharolobus solfataricus (Sulfolobus solfataricus)
O93715 aldose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.359) from Saccharolobus solfataricus
Q7LYI9 aldose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.359) from Saccharolobus solfataricus
O93715 aldose 1-dehydrogenase subunit (EC 1.1.1.376; EC 1.1.1.359; EC 1.1.1.119) from Saccharolobus solfataricus
PFams: ADH_N, Glu_dehyd_C
366 amino acids: PaperBLAST, CDD (Cluster 2)

Sinorhizobium meliloti

SMc00588 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Sinorhizobium meliloti 1021
PFams: GFO_IDH_MocA
308 amino acids: PaperBLAST, CDD (Cluster 3)

Thermoplasma acidophilum

GLCDH_THEAC / P13203 Glucose 1-dehydrogenase; GDH; GlcDH; Galactose 1-dehydrogenase; EC 1.1.1.47; EC 1.1.1.120; EC 1.1.1.48 from Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
P13203 aldose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.359) from Thermoplasma acidophilum
P13203 glucose dehydrogenase subunit (EC 1.1.1.119) from Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
PFams: ADH_N, Glu_dehyd_C
361 amino acids: PaperBLAST, CDD (Cluster 2)

Thermoplasma volcanium

Q979W2 glucose/galactose 1-dehydrogenase (EC 1.1.1.360) from Thermoplasma volcanium
PFams: ADH_N, Glu_dehyd_C
361 amino acids: PaperBLAST, CDD (Cluster 2)