GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for gtsA (glucose ABC transporter, substrate-binding component (GtsA)) in lactose catabolism

Or see other characterized proteins similar to gtsA

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Definition of gtsA

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 414-432 amino acids (4/5 heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.1.30 / Q88P38 GtsA (GLcE), component of Glucose porter, GtsABCD from Pseudomonas putida (strain KT2440)
Heteromeric, 428 amino acids: PaperBLAST, CDD, Compare to cluster

TC 3.A.1.1.24 / Q72KX2 Glucose-binding protein aka TT_C0328, component of The glucose/mannose porter TTC0326-8 plus MalK1 (ABC protein, shared with 3.A.1.1.25) from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
PFams: SBP_bac_1, SBP_bac_8
Heteromeric, 414 amino acids: PaperBLAST, CDD, Compare to cluster

A0A165KPY4 Sugar ABC transporter substrate-binding protein
416 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_22145 ABC transporter for D-Glucose-6-Phosphate, periplasmic substrate-binding component from Pseudomonas simiae WCS417
Heteromeric, 428 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_1894 ABC transporter for D-Galactose and D-Glucose, periplasmic substrate-binding component from Pseudomonas fluorescens GW456-L13
Heteromeric, 432 amino acids: PaperBLAST, CDD, Compare to cluster