GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for lacA' (periplasmic lactose 3-dehydrogenase, LacA subunit) in lactose catabolism

Or see other characterized proteins similar to lacA'

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Or cluster curated proteins matching a keyword

Definition of lacA'

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 567-579 amino acids (heteromeric)

The first sequence in each cluster is the seed.

CCNA_01706 lacA: subunit of periplasmic glucoside 3-dehydrogenase (EC from Caulobacter crescentus NA1000
Q9A7T6 lactose 3-dehydrogenase flavin subunit (EC from Caulobacter vibrioides (strain ATCC 19089 / CB15)
PFams: FAD_binding_2, GMC_oxred_N, GMC_oxred_C
Heteromeric, 579 amino acids: PaperBLAST, CDD, Compare to cluster

CA265_RS15345 periplasmic glucoside 3-dehydrogenase (lacA subunit) (EC from Pedobacter sp. GW460-11-11-14-LB5
PFams: GMC_oxred_N, GMC_oxred_C
Heteromeric, 567 amino acids: PaperBLAST, CDD, Compare to cluster