Other Characterized Proteins Similar to lacB'

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to lacB'

Finding the characterized proteins for lacB' (periplasmic lactose 3-dehydrogenase, cytochrome c component (LacB)) in lactose catabolism

Or see clustering for step lacB'

Or see all steps for lactose catabolism

Or cluster curated proteins matching a keyword

Definition of lacB'

Curated sequence CCNA_01704: lacB: cytochrome c2 component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13)
Curated sequence CA265_RS15360: predicted cytochrome c component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13)
Ignore hits to items matching 1.1.99.13 when looking for 'other' hits

Fetched 2 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 11 other characterized sequences. (Found 13 hits including self hits.)

Removing ignored items reduces this to 9 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for lacB'.)

C554_METTR / D5QVH0 Cytochrome c-554; Cytochrome c class I from Methylosinus trichosporium
PFams: Cytochrom_C
132 amino acids: PaperBLAST, CDD, SwissProt::D5QVH0
41% identical to

CCNA_01704 lacB: cytochrome c2 component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Caulobacter crescentus NA1000
PFams: Cytochrome_CBB3, Cytochrom_C
Heteromeric, 120 amino acids: PaperBLAST, CDD

CYCM_BRADU / P30323 Cytochrome c homolog from Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
PFams: Cytochrom_C
184 amino acids: PaperBLAST, CDD, SwissProt::P30323
41% identical to

CYC2_DROME / P84029 Cytochrome c-2; Cytochrome c-proximal from Drosophila melanogaster (Fruit fly)
PFams: Cytochrome_CBB3, Cytochrom_C
108 amino acids: PaperBLAST, CDD, SwissProt::P84029
45% identical to

CYC_HUMAN / P99999 Cytochrome c from Homo sapiens (Human)
PFams: Cytochrom_C
105 amino acids: PaperBLAST, CDD, SwissProt::P99999
43% identical to

CYC1_ASCSU / P92504 Cytochrome c type-1 from Ascaris suum (Pig roundworm) (Ascaris lumbricoides)
PFams: Cytochrom_C
112 amino acids: PaperBLAST, CDD, SwissProt::P92504
43% identical to

CYC_MOUSE / P62897 Cytochrome c, somatic from Mus musculus (Mouse)
PFams: Cytochrom_C
105 amino acids: PaperBLAST, CDD, SwissProt::P62897
42% identical to

CYC_BOVIN / P62894 Cytochrome c from Bos taurus (Bovine)
PFams: Cytochrome_CBB3, Cytochrom_C
105 amino acids: PaperBLAST, CDD, SwissProt::P62894
41% identical to

CH_122363 cytochrome c from Emericella nidulans
PFams: Cytochrome_CBB3, Cytochrom_C
113 amino acids: PaperBLAST, CDD, CharProtDB::CH_122363
40% identical to

GI|1373423 cytochrome c from Candida albicans
PFams: Cytochrom_C, Cytochrome_CBB3
110 amino acids: PaperBLAST, CDD, CharProtDB::CH_123678
40% identical to

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for lacB'.)

Q9A7T8 lactose 3-dehydrogenase cytochrome c subunit (EC 1.1.99.13) from Caulobacter vibrioides (strain ATCC 19089 / CB15)
PFams: Cytochrome_CBB3, Cytochrom_C
Heteromeric, 110 amino acids: PaperBLAST, CDD, metacyc::MONOMER-15713
99% identical to

Echvi_1841 predicted cytochrome c component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Echinicola vietnamensis KMM 6221, DSM 17526
PFams: Cytochrom_C
Heteromeric, 141 amino acids: PaperBLAST, CDD, reanno::Cola:Echvi_1841
41% identical to

CA265_RS15360 predicted cytochrome c component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Pedobacter sp. GW460-11-11-14-LB5
PFams: Cytochrom_C
Heteromeric, 127 amino acids: PaperBLAST, CDD