GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for lacE (lactose ABC transporter, substrate-binding component) in lactose catabolism

Or see other characterized proteins similar to lacE

Or see all steps for lactose catabolism

Or cluster curated proteins matching a keyword

Definition of lacE

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 422-424 amino acids (heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.1.4 / P29822 LacE, component of Lactose porter from Agrobacterium radiobacter
PFams: SBP_bac_1, SBP_bac_8
Heteromeric, 422 amino acids: PaperBLAST, CDD, Compare to cluster

SM_b21652 ABC transporter for Lactose, periplasmic substrate-binding component from Sinorhizobium meliloti 1021
PFams: SBP_bac_1, SBP_bac_8
Heteromeric, 424 amino acids: PaperBLAST, CDD, Compare to cluster