GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for lacK (lactose ABC transporter, ATPase component) in lactose catabolism

Or see other characterized proteins similar to lacK

Or see all steps for lactose catabolism

Or cluster curated proteins matching a keyword

Definition of lacK

Fetched 2 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 358-363 amino acids (heteromeric)

The first sequence in each cluster is the seed.

TC 3.A.1.1.4 / Q01937 LacK, component of Lactose porter from Agrobacterium radiobacter
PFams: ABC_tran, OB_MalK, TOBE_2
Heteromeric, 363 amino acids: PaperBLAST, CDD, Compare to cluster

SM_b20002 ABC transporter for Lactose, ATPase component from Sinorhizobium meliloti 1021
PFams: ABC_tran, OB_MalK, TOBE_2
Heteromeric, 358 amino acids: PaperBLAST, CDD, Compare to cluster