GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for lacL (heteromeric lactase, large subunit) in lactose catabolism

Or see other characterized proteins similar to lacL

Or see all steps for lactose catabolism

Or cluster curated proteins matching a keyword

Definition of lacL

Fetched 13 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 13 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 483-628 amino acids (1/13 heteromeric)

The first sequence in each cluster is the seed.

A0SWS3 beta-galactosidase (EC 3.2.1.23) from Lactobacillus acidophilus
PFams: Glyco_hydro_2_N, BetaGal_dom4_5, Glyco_hydro_2, Glyco_hydro_2_C
628 amino acids: PaperBLAST, CDD, Compare to cluster

AAA25267.1 β-galactosidase L+M (LacL+LacM) (EC 3.2.1.23) (see protein)
PFams: Glyco_hydro_2_N, Glyco_hydro_2, Glyco_hydro_2_C
626 amino acids: PaperBLAST, CDD, Compare to cluster

AAL09167.1 β-galactosidase (LacL+LacM) (EC 3.2.1.23) (see protein)
PFams: Glyco_hydro_2_N, Glyco_hydro_2, Glyco_hydro_2_C
483 amino acids: PaperBLAST, CDD, Compare to cluster

Q19R72 beta-galactosidase (EC 3.2.1.23) from Lactobacillus reuteri
ABF72116.1 β-galactosidase (Lreu?gal) (LacL + LacM) (EC 3.2.1.23) (see protein)
PFams: Glyco_hydro_2_N, Glyco_hydro_2, Glyco_hydro_2_C
628 amino acids: PaperBLAST, CDD, Compare to cluster

ABJ65308.1 LVIS_2259 + LVIS_2258 (EC 3.2.1.23) (see protein)
PFams: Glyco_hydro_2_N, Glyco_hydro_2, Glyco_hydro_2_C
628 amino acids: PaperBLAST, CDD, Compare to cluster

ACC38286.1 β-galactosidase large subunit (LacL) (EC 3.2.1.23) (see protein)
PFams: Glyco_hydro_2_N, BetaGal_dom4_5, Glyco_hydro_2, Glyco_hydro_2_C
628 amino acids: PaperBLAST, CDD, Compare to cluster

AEG39988.1 β-galactosidase large subunit (LacL;WANG_0293) (EC 3.2.1.23) (see protein)
PFams: Glyco_hydro_2_N, BetaGal_dom4_5, Glyco_hydro_2, Glyco_hydro_2_C
628 amino acids: PaperBLAST, CDD, Compare to cluster

AEJ32720.1 β-galactosidase (LacLM;LacL+LacM) (EC 3.2.1.23) (see protein)
PFams: Glyco_hydro_2_N, Glyco_hydro_2, Glyco_hydro_2_C
626 amino acids: PaperBLAST, CDD, Compare to cluster

BAA20536.1 β-galactosidase (LacL) (EC 3.2.1.23) (see protein)
PFams: Glyco_hydro_2_N, BetaGal_dom4_5, Glyco_hydro_2, Glyco_hydro_2_C
628 amino acids: PaperBLAST, CDD, Compare to cluster

CAA57730.1 β-galactosidase L+S (LacL+LacS) (heterodimer) (EC 3.2.1.23) (see protein)
PFams: Glyco_hydro_2_N, Glyco_hydro_2, Glyco_hydro_2_C
625 amino acids: PaperBLAST, CDD, Compare to cluster

CAD65569.1 β-galactosidase (LacL+LacM,lp_3483+lp_3484) (EC 3.2.1.23) (see protein)
PFams: Glyco_hydro_2_N, Glyco_hydro_2, Glyco_hydro_2_C
626 amino acids: PaperBLAST, CDD, Compare to cluster

CAZ66936.1 β-galactosidase (LacL+LacM) (EC 3.2.1.23) (see protein)
PFams: Glyco_hydro_2_N, Glyco_hydro_2, Glyco_hydro_2_C
626 amino acids: PaperBLAST, CDD, Compare to cluster

BGAL_LACHE / Q7WTB4 Beta-galactosidase large subunit; Beta-gal large subunit; Lactase large subunit; EC 3.2.1.23 from Lactobacillus helveticus (Lactobacillus suntoryeus)
PFams: Glyco_hydro_2_N, Glyco_hydro_2, Glyco_hydro_2_C
Heteromeric, 628 amino acids: PaperBLAST, CDD, Compare to cluster