Other Characterized Proteins Similar to aapJ

Finding the characterized proteins for aapJ (ABC transporter for amino acids (Asp/Asn/Glu/Pro/Leu), substrate-binding component AapJ) in L-leucine catabolism

Or see clustering for step aapJ

Or see all steps for L-leucine catabolism

Or cluster curated proteins matching a keyword

Definition of aapJ

• Curated sequence Q52812: AapJ, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux)
• Ignore hits to SMc02118 when looking for 'other' hits (ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, periplasmic substrate-binding component)

Fetched 1 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 4 other characterized sequences. (Found 5 hits including self hits.)

Removing ignored items reduces this to 3 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for aapJ.)

TC 3.A.1.3.7 / Q52663 BztA, component of Glutamate/glutamine/aspartate/asparagine porter from Rhodobacter capsulatus (Rhodopseudomonas capsulata)
PFams: SBP_bac_3
Heteromeric, 338 amino acids: PaperBLAST, CDD, TCDB::Q52663
58% identical to

TC 3.A.1.3.8 / Q52812 AapJ, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) from Rhizobium leguminosarum (biovar viciae)
PFams: SBP_bac_3
Heteromeric, 341 amino acids: PaperBLAST, CDD

Pf6N2E2_5402 ABC transporter for D-Alanine, periplasmic substrate-binding component from Pseudomonas fluorescens FW300-N2E2
PFams: SBP_bac_3
Heteromeric, 343 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_5402
57% identical to

TC 3.A.1.3.8 / Q52812 AapJ, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) from Rhizobium leguminosarum (biovar viciae)
PFams: SBP_bac_3
Heteromeric, 341 amino acids: PaperBLAST, CDD

TC 3.A.1.3.18 / Q8YPM9 NatF, component of Acidic and neutral amino acid uptake transporter NatFGH/BgtA. BgtA is shared with BgtAB
PFams: SBP_bac_3, NMT1
Heteromeric, 369 amino acids: PaperBLAST, CDD, TCDB::Q8YPM9
47% identical to

TC 3.A.1.3.8 / Q52812 AapJ, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) from Rhizobium leguminosarum (biovar viciae)
PFams: SBP_bac_3
Heteromeric, 341 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for aapJ.)

SMc02118 ABC transporter for L-Glutamine, L-Histidine, and other L-amino acids, periplasmic substrate-binding component from Sinorhizobium meliloti 1021
PFams: SBP_bac_3
Heteromeric, 341 amino acids: PaperBLAST, CDD, reanno::Smeli:SMc02118
80% identical to

TC 3.A.1.3.8 / Q52812 AapJ, component of General L-amino acid porter; transports basic and acidic amino acids preferentially, but also transports aliphatic amino acids (catalyzes both uptake and efflux) from Rhizobium leguminosarum (biovar viciae)
PFams: SBP_bac_3
Heteromeric, 341 amino acids: PaperBLAST, CDD