GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to atoD

Finding the characterized proteins for atoD (acetoacetyl-CoA transferase, B subunit) in L-leucine catabolism

Or see clustering for step atoD

Or see all steps for L-leucine catabolism

Or cluster curated proteins matching a keyword

Definition of atoD

Fetched 4 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 11 other characterized sequences. (Found 15 hits including self hits.)

Removing ignored items reduces this to 1 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for atoD.)

P0A102 3-oxoadipate CoA-transferase (subunit 1/2) (EC 2.8.3.6) from Pseudomonas putida
P0A102 β subunit of β-ketoadipate succinyl-CoA transferase (EC 2.8.3.6) from Pseudomonas putida
GI|151428 3-oxoadipate CoA-transferase subunit B; EC 2.8.3.6 from Pseudomonas putida
PFams: CoA_trans
Heteromeric, 213 amino acids: PaperBLAST, CDD, BRENDA::P0A102
55% identical to

Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 209 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for atoD.)

Sama_1356 3-oxoacid CoA-transferase (EC 2.8.3.5) from Shewanella amazonensis SB2B
PFams: CoA_trans
218 amino acids: PaperBLAST, CDD, reanno::SB2B:6937186
84% identical to

Pf6N2E2_2112 Dehydrocarnitine CoA-transferase and acetoacetate CoA-transferase, subunit B from Pseudomonas fluorescens FW300-N2E2
PFams: CoA_trans, AcetylCoA_hyd_C
Heteromeric, 221 amino acids: PaperBLAST, CDD

Q9D0K2 3-oxoacid CoA-transferase (EC 2.8.3.5) from Mus musculus
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, BRENDA::Q9D0K2
63% identical to

Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 209 amino acids: PaperBLAST, CDD

SCOT1_RAT / B2GV06 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; 3-oxoacid CoA-transferase 1; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; SCOT-s; EC 2.8.3.5 from Rattus norvegicus (Rat)
B2GV06 3-oxoacid CoA-transferase (EC 2.8.3.5) from Rattus norvegicus
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, BRENDA::B2GV06
63% identical to

Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 209 amino acids: PaperBLAST, CDD

SCOT1_HUMAN / P55809 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; 3-oxoacid CoA-transferase 1; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; SCOT-s; EC 2.8.3.5 from Homo sapiens (Human)
P55809 3-oxoacid CoA-transferase (EC 2.8.3.5) from Homo sapiens
P55809 succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial (EC 2.8.3.5) from Homo sapiens
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, BRENDA::P55809
62% identical to

Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 209 amino acids: PaperBLAST, CDD

SCOT1_PIG / Q29551 Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial; 3-oxoacid CoA-transferase 1; Somatic-type succinyl-CoA:3-oxoacid CoA-transferase; SCOT-s; EC 2.8.3.5 from Sus scrofa (Pig)
Q29551 3-oxoacid CoA-transferase (EC 2.8.3.5) from Sus scrofa
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, SwissProt::Q29551
62% identical to

Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 209 amino acids: PaperBLAST, CDD

SCO2A_RAT / Q5XIJ9 Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial; 3-oxoacid CoA-transferase 2A; Testis-specific succinyl-CoA:3-oxoacid CoA-transferase 1; SCOT-t1; EC 2.8.3.5 from Rattus norvegicus (Rat)
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, SwissProt::Q5XIJ9
61% identical to

Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 209 amino acids: PaperBLAST, CDD

SCOT_DROME / Q9W058 Succinyl-CoA:3-ketoacid-coenzyme A transferase, mitochondrial; 3-oxoacid CoA-transferase; EC 2.8.3.5 from Drosophila melanogaster (Fruit fly)
Q9W058 3-oxoacid CoA-transferase (EC 2.8.3.5) from Drosophila melanogaster
PFams: CoA_trans, CoA_trans
516 amino acids: PaperBLAST, CDD, SwissProt::Q9W058
60% identical to

Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 209 amino acids: PaperBLAST, CDD

SCOT2_HUMAN / Q9BYC2 Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial; 3-oxoacid CoA-transferase 2A; Testis-specific succinyl-CoA:3-oxoacid CoA-transferase; SCOT-t; EC 2.8.3.5 from Homo sapiens (Human)
Q9BYC2 3-oxoacid CoA-transferase (EC 2.8.3.5) from Homo sapiens
PFams: CoA_trans, CoA_trans
517 amino acids: PaperBLAST, CDD, SwissProt::Q9BYC2
60% identical to

Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 209 amino acids: PaperBLAST, CDD

SCO2B_MOUSE / Q9ESL0 Succinyl-CoA:3-ketoacid coenzyme A transferase 2B, mitochondrial; 3-oxoacid CoA-transferase 2B; Testis-specific succinyl-CoA:3-oxoacid CoA-transferase 2; SCOT-t2; EC 2.8.3.5 from Mus musculus (Mouse)
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, SwissProt::Q9ESL0
59% identical to

Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 209 amino acids: PaperBLAST, CDD

Q9JJN4 3-oxoacid CoA-transferase (EC 2.8.3.5) from Mus musculus
PFams: CoA_trans, CoA_trans
520 amino acids: PaperBLAST, CDD, BRENDA::Q9JJN4
59% identical to

Psest_1077 acetyl-CoA:acetoacetate CoA transferase, B subunit (EC 2.8.3.8) from Pseudomonas stutzeri RCH2
PFams: CoA_trans
Heteromeric, 209 amino acids: PaperBLAST, CDD