GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for liuB (3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit) in L-leucine catabolism

Or see other characterized proteins similar to liuB

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Or cluster curated proteins matching a keyword

Definition of liuB

Fetched 11 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 11 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 649-737 amino acids (5/11 heteromeric)

The first sequence in each cluster is the seed.

CH_122249 3-methylcrotonyl-CoA carboxylase biotin-containig subunit; EC 6.4.1.4 from Emericella nidulans
PFams: Biotin_carb_N, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, Biotin_lipoyl
723 amino acids: PaperBLAST, CDD, Compare to cluster

MCCA_ARATH / Q42523 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; MCCase subunit alpha; 3-methylcrotonyl-CoA carboxylase 1; 3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha; EC 6.4.1.4 from Arabidopsis thaliana (Mouse-ear cress)
Q42523 methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) from Arabidopsis thaliana
PFams: Biotin_carb_N, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, Biotin_lipoyl
Heteromeric, 734 amino acids: PaperBLAST, CDD, Compare to cluster

Q9I299 methylcrotonyl-CoA carboxylase α-subunit (EC 6.4.1.4) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q9I299 methylcrotonoyl-CoA carboxylase (subunit 2/2) (EC 6.4.1.4) from Pseudomonas aeruginosa
PFams: Biotin_carb_N, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, Biotin_lipoyl
Heteromeric, 655 amino acids: PaperBLAST, CDD, Compare to cluster

MCCA_ORYSJ / Q2QMG2 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; MCCase subunit alpha; 3-methylcrotonyl-CoA carboxylase 1; 3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha; EC 6.4.1.4 from Oryza sativa subsp. japonica (Rice)
PFams: Biotin_carb_N, CPSase_L_D2, Dala_Dala_lig_C, Biotin_carb_C, Biotin_lipoyl
Heteromeric, 737 amino acids: PaperBLAST, CDD, Compare to cluster

Q96RQ3 3-methylcrotonyl-CoA carboxylase α subunit (EC 6.4.1.4) from Homo sapiens
MCCA_HUMAN / Q96RQ3 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; MCCase subunit alpha; 3-methylcrotonyl-CoA carboxylase 1; 3-methylcrotonyl-CoA carboxylase biotin-containing subunit; 3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha; EC 6.4.1.4 from Homo sapiens (Human)
PFams: Biotin_carb_N, CPSase_L_D2, RimK, Dala_Dala_lig_C, ATP-grasp, ATP-grasp_3, Biotin_carb_C, Biotin_lipoyl
Heteromeric, 725 amino acids: PaperBLAST, CDD, Compare to cluster

MCCA_MOUSE / Q99MR8 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial; MCCase subunit alpha; 3-methylcrotonyl-CoA carboxylase 1; 3-methylcrotonyl-CoA carboxylase biotin-containing subunit; 3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha; EC 6.4.1.4 from Mus musculus (Mouse)
PFams: Biotin_carb_N, CPSase_L_D2, RimK, Dala_Dala_lig_C, ATP-grasp, ATP-grasp_3, Biotin_carb_C, Biotin_lipoyl
717 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_1359 Methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) from Shewanella amazonensis SB2B
PFams: Biotin_carb_N, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, Biotin_lipoyl
673 amino acids: PaperBLAST, CDD, Compare to cluster

SM_b21124 Methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) from Sinorhizobium meliloti 1021
PFams: Biotin_carb_N, CPSase_L_D2, Dala_Dala_lig_C, ATP-grasp, Biotin_carb_C, Biotin_lipoyl
662 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_3984 Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) from Pseudomonas fluorescens FW300-N1B4
PFams: Biotin_carb_N, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, Biotin_lipoyl
Heteromeric, 651 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_01595 Methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) from Pseudomonas fluorescens FW300-N2C3
PFams: Biotin_carb_N, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, Biotin_lipoyl
649 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_2194 Methylcrotonoyl-CoA carboxylase (EC 6.4.1.4) from Pseudomonas fluorescens FW300-N2E2
PFams: Biotin_carb_N, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, Biotin_carb_C, Biotin_lipoyl
649 amino acids: PaperBLAST, CDD, Compare to cluster