GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for LHT (L-lysine transporter) in L-lysine catabolism

Or see other characterized proteins similar to LHT

Or see all steps for L-lysine catabolism

Or cluster curated proteins matching a keyword

Definition of LHT

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 441-519 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

LHT1_ARATH / Q9FKS8 Lysine histidine transporter 1 from Arabidopsis thaliana (Mouse-ear cress)
TC 2.A.18.2.2 / Q9FKS8 Lysine/histidine transporter, LHT1
PFams: Aa_trans, Trp_Tyr_perm
446 amino acids: PaperBLAST, CDD, Compare to cluster

LHT2_ARATH / Q9LRB5 Lysine histidine transporter 2; AtLHT2; Amino acid transporter-like protein 2 from Arabidopsis thaliana (Mouse-ear cress)
TC 2.A.18.2.9 / Q9LRB5 Lysine/histidine transporter 2 (AtLHT2) (Amino acid transporter-like protein 2) from Arabidopsis thaliana
PFams: Aa_trans, Trp_Tyr_perm
441 amino acids: PaperBLAST, CDD, Compare to cluster

LHTL8_ARATH / Q9SX98 Lysine histidine transporter-like 8; Amino acid transporter-like protein 1 from Arabidopsis thaliana (Mouse-ear cress)
TC 2.A.18.2.8 / Q9SX98 Lysine histidine transporter-like 8 (Amino acid transporter-like protein 1) from Arabidopsis thaliana
PFams: Aa_trans
519 amino acids: PaperBLAST, CDD, Compare to cluster

TC 2.A.18.2.6 / Q84WE9 Lysine-Histidine Transporter-7 (LHT7) found in mature pollen (Bock et al., 2006) (most like 2.A.18.2.2; 30% identity) from Arabidopsis thaliana
PFams: Aa_trans
456 amino acids: PaperBLAST, CDD, Compare to cluster