Other Characterized Proteins Similar to alr

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to alr

Finding the characterized proteins for alr (lysine racemase) in L-lysine catabolism

Or see clustering for step alr

Or see all steps for L-lysine catabolism

Or cluster curated proteins matching a keyword

Definition of alr

Curated proteins or TIGRFams with EC 5.1.1.5
Ignore hits to items matching 5.1.1.10 when looking for 'other' hits
Comment: Some lysine racemases are very similar to broad-specificity amino acid racemases (EC 5.1.1.10)

Fetched 5 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 5 other characterized sequences. (Found 10 hits including self hits.)

Removing ignored items reduces this to 1 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for alr.)

Q1WV14 alanine racemase (EC 5.1.1.1) from Lactobacillus salivarius
PFams: Ala_racemase_N, Ala_racemase_C
371 amino acids: PaperBLAST, CDD, BRENDA::Q1WV14
40% identical to

LYSR_OENOB / Q04HB7 Lysine racemase; EC 5.1.1.5 from Oenococcus oeni (strain ATCC BAA-331 / PSU-1)
Q04HB7 lysine racemase (EC 5.1.1.5) from Oenococcus oeni
PFams: Ala_racemase_N, Ala_racemase_C
371 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for alr.)

BSR_PSEPU / I6LNY0 Broad specificity amino-acid racemase; EC 5.1.1.10 from Pseudomonas putida (Arthrobacter siderocapsulatus)
PFams: Ala_racemase_N, Ala_racemase_C
409 amino acids: PaperBLAST, CDD, SwissProt::I6LNY0
97% identical to

Q88GJ9 amino acid racemase (EC 5.1.1.10; EC 5.1.1.24; EC 5.1.1.18; EC 5.1.1.2; EC 5.1.1.9; EC 5.1.1.5; EC 5.1.1.1) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
BSR_PSEPK / Q88GJ9 Broad specificity amino-acid racemase; Broad spectrum racemase; EC 5.1.1.10 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: Ala_racemase_N, Ala_racemase_C
409 amino acids: PaperBLAST, CDD

BSR_PSETA / I0J1I6 Broad specificity amino-acid racemase; Arginine racemase; Broad substrate specificity racemase; EC 5.1.1.10 from Pseudomonas taetrolens
I0J1I6 amino-acid racemase (EC 5.1.1.10) from Pseudomonas taetrolens
PFams: Ala_racemase_N, Ala_racemase_C
409 amino acids: PaperBLAST, CDD, SwissProt::I0J1I6
73% identical to

BSR_AERHH / A0KLG5 Broad specificity amino-acid racemase; Broad spectrum racemase; EC 5.1.1.10 from Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / JCM 1027 / KCTC 2358 / NCIMB 9240)
PFams: Ala_racemase_N, Ala_racemase_C
408 amino acids: PaperBLAST, CDD, SwissProt::A0KLG5
56% identical to

BSR_VIBCH / Q9KSE5 Broad specificity amino-acid racemase; Broad spectrum racemase; EC 5.1.1.10 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
PFams: Ala_racemase_N, Ala_racemase_C
407 amino acids: PaperBLAST, CDD, SwissProt::Q9KSE5
49% identical to