GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for alr (lysine racemase) in L-lysine catabolism

Or see other characterized proteins similar to alr

Or see all steps for L-lysine catabolism

Or cluster curated proteins matching a keyword

Definition of alr

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by cluster

Oenococcus oeni

LYSR_OENOB / Q04HB7 Lysine racemase; EC from Oenococcus oeni (strain ATCC BAA-331 / PSU-1)
Q04HB7 lysine racemase (EC from Oenococcus oeni
PFams: Ala_racemase_N, Ala_racemase_C
371 amino acids: PaperBLAST, CDD (Singleton 2)

Proteus mirabilis

LYR_PROMI / M4GGR9 Lysine racemase; EC from Proteus mirabilis
M4GGR9 lysine racemase (EC from Proteus mirabilis
PFams: Ala_racemase_N, Ala_racemase_C
407 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas putida

Q88GJ9 amino acid racemase (EC; EC; EC; EC; EC; EC; EC from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
BSR_PSEPK / Q88GJ9 Broad specificity amino-acid racemase; Broad spectrum racemase; EC from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: Ala_racemase_N, Ala_racemase_C
409 amino acids: PaperBLAST, CDD (Cluster 1)

Thermotoga maritima

LYSRA_THEMA / Q9X1T3 Lysine racemase; Lys racemase; Ornithine racemase; EC; EC from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: Ala_racemase_N
354 amino acids: PaperBLAST, CDD (Singleton 3)

uncultured bacterium

C7ACH5 lysine racemase (EC from uncultured bacterium
PFams: MR_MLE_N, Semialdhyde_dh
393 amino acids: PaperBLAST, CDD (Singleton 1)