GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for amaA (L-pipecolate oxidase) in L-lysine catabolism

Or see other characterized proteins similar to amaA

Or see all steps for L-lysine catabolism

Or cluster curated proteins matching a keyword

Definition of amaA

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 390-390 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q9P0Z9 L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens
PFams: DAO, NAD_binding_8
390 amino acids: PaperBLAST, CDD, Compare to cluster

Q8N6Z6 L-pipecolate oxidase (EC 1.5.3.7) from Homo sapiens
PFams: DAO, NAD_binding_8
390 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

FAP1_SCHPO / O43029 L-pipecolate oxidase; L-pipecolic acid oxidase; EC 1.5.3.7 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
RF|NP_595239.1 L-pipecolate oxidase from Schizosaccharomyces pombe
PFams: DAO, NAD_binding_8
412 amino acids: PaperBLAST, CDD

Q88CC4 pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: DAO
432 amino acids: PaperBLAST, CDD