GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for amaD (D-lysine oxidase) in L-lysine catabolism

Or see other characterized proteins similar to amaD

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Or cluster curated proteins matching a keyword

Definition of amaD

Fetched 19 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 15 of these sequences

Found 1 clusters of similar sequences. Another 5 sequences are not clustered. Download as table or as draft rules or view by cluster

Bacillus subtilis

O31616 glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis (strain 168)
GLYOX_BACSU / O31616 Glycine oxidase; GO; EC 1.4.3.19 from Bacillus subtilis (strain 168)
O31616 glycine oxidase (EC 1.4.3.19) from Bacillus subtilis
PFams: DAO, NAD_binding_8
369 amino acids: PaperBLAST, CDD (Singleton 3)

Caenorhabditis elegans

OXDA_CAEEL / Q95XG9 D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Caenorhabditis elegans
PFams: DAO
322 amino acids: PaperBLAST, CDD (Cluster 1)

Candida boidinii

Q9HGY3 D-amino-acid oxidase (EC 1.4.3.3) from Candida boidinii
PFams: DAO
345 amino acids: PaperBLAST, CDD (Singleton 4)

Cyprinus carpio

Q6TGN2 D-amino-acid oxidase (EC 1.4.3.3) from Cyprinus carpio
PFams: DAO
347 amino acids: PaperBLAST, CDD (Cluster 1)

Fusarium solani

P24552 D-amino-acid oxidase (EC 1.4.3.3) from Fusarium solani
PFams: DAO
361 amino acids: PaperBLAST, CDD (Cluster 1)

Glutamicibacter protophormiae

Q7X2D3 D-amino-acid oxidase (EC 1.4.3.3) from Glutamicibacter protophormiae
PFams: DAO
326 amino acids: PaperBLAST, CDD (Cluster 1)

Homo sapiens

P14920 D-amino acid oxidase subunit (EC 1.4.3.3) from Homo sapiens
OXDA_HUMAN / P14920 D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Homo sapiens (Human)
P14920 D-amino-acid oxidase (EC 1.4.3.3) from Homo sapiens
PFams: DAO
347 amino acids: PaperBLAST, CDD (Cluster 1)

Mus musculus

P18894 D-amino-acid oxidase (EC 1.4.3.3) from Mus musculus
PFams: DAO
345 amino acids: PaperBLAST, CDD (Cluster 1)

Mycobacterium leprae

Q9RIA4 D-amino-acid oxidase (EC 1.4.3.3) from Mycobacterium leprae
PFams: DAO, FAD_binding_2
320 amino acids: PaperBLAST, CDD (Cluster 1)

Pseudomonas putida

Q88GX1 D-lysine oxidase (EC 1.4.3.3) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: DAO
414 amino acids: PaperBLAST, CDD (Singleton 5)

Rattus norvegicus

O35078 D-amino-acid oxidase (EC 1.4.3.3) from Rattus norvegicus
PFams: DAO
346 amino acids: PaperBLAST, CDD (Cluster 1)

Rhodotorula toruloides

P80324 D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides
PFams: DAO
368 amino acids: PaperBLAST, CDD (Cluster 1)

Rubrobacter xylanophilus

A0A077JN67 D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus
PFams: DAO, FAD_binding_2
324 amino acids: PaperBLAST, CDD (Cluster 1)

Q1AYM8 D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus
PFams: DAO, FAD_binding_2
326 amino acids: PaperBLAST, CDD (Cluster 1)

Sus scrofa

OXDA_PIG / P00371 D-amino-acid oxidase; DAAO; DAMOX; DAO; EC 1.4.3.3 from Sus scrofa (Pig)
P00371 D-amino-acid oxidase (EC 1.4.3.3) from Sus scrofa
PFams: DAO
347 amino acids: PaperBLAST, CDD (Cluster 1)

Trigonopsis variabilis

Q6R4Q9 D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis
PFams: DAO, FAD_binding_2
356 amino acids: PaperBLAST, CDD (Cluster 1)

Q99042 D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis
PFams: DAO, FAD_binding_2
356 amino acids: PaperBLAST, CDD (Cluster 1)

Zea mays

A0PFJ3 D-amino-acid oxidase (EC 1.4.3.3) from Zea mays
PFams: DAO
386 amino acids: PaperBLAST, CDD (Singleton 2)

uncultured bacterium

A0A0E3JXD9 D-amino-acid oxidase (EC 1.4.3.3) from uncultured bacterium
PFams: DAO
357 amino acids: PaperBLAST, CDD (Singleton 1)