GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for cadA (lysine decarboxylase) in L-lysine catabolism

Or see other characterized proteins similar to cadA

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Or cluster curated proteins matching a keyword

Definition of cadA

Fetched 11 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 9 of these sequences

Found 2 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by cluster

Aliivibrio salmonicida

B6EP92 L-lysine decarboxylase (EC 4.1.1.18) from Aliivibrio salmonicida (strain LFI1238)
PFams: Pyridoxal_deC
515 amino acids: PaperBLAST, CDD (Cluster 2)

Eikenella corrodens

Q9Z4R7 lysine decarboxylase (EC 4.1.1.18) from Eikenella corrodens
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
709 amino acids: PaperBLAST, CDD (Cluster 1)

Escherichia coli

b4131 lysine decarboxylase 1 (EC 4.1.1.18) from Escherichia coli K-12 substr. MG1655
LDCI_ECOLI / P0A9H3 Inducible lysine decarboxylase; LDCI; EC 4.1.1.18 from Escherichia coli (strain K12)
P0A9H3 lysine decarboxylase (EC 4.1.1.18) from Escherichia coli
P0A9H3 lysine decarboxylase 1 (EC 4.1.1.18) from Escherichia coli (strain K12)
RF|NP_418555 lysine decarboxylase, inducible; EC 4.1.1.18 from Escherichia coli K12
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
715 amino acids: PaperBLAST, CDD (Cluster 1)

b0186 lysine decarboxylase 2 (EC 4.1.1.18) from Escherichia coli K-12 substr. MG1655
LDCC_ECOLI / P52095 Constitutive lysine decarboxylase; LDCC; EC 4.1.1.18 from Escherichia coli (strain K12)
P52095 lysine decarboxylase (EC 4.1.1.18) from Escherichia coli
P52095 lysine decarboxylase 2 (EC 4.1.1.18) from Escherichia coli (strain K12)
GB|BAA21656.1 lysine decarboxylase, constitutive; EC 4.1.1.18 from Escherichia coli K12
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
713 amino acids: PaperBLAST, CDD (Cluster 1)

Klebsiella aerogenes

A0A094XEM2 lysine decarboxylase (EC 4.1.1.18) from Klebsiella aerogenes
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
715 amino acids: PaperBLAST, CDD (Cluster 1)

A0A0H3FP92 lysine decarboxylase (EC 4.1.1.18) from Klebsiella aerogenes
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
712 amino acids: PaperBLAST, CDD (Cluster 1)

Morus alba

A0A2Z4EVE5 lysine decarboxylase (EC 4.1.1.18) from Morus alba
PFams: LDcluster4, Lysine_decarbox
218 amino acids: PaperBLAST, CDD (Singleton 1)

Pseudomonas aeruginosa

LDCA_PSEAE / Q9I2S7 Lysine decarboxylase LdcA; EC 4.1.1.18 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
751 amino acids: PaperBLAST, CDD (Cluster 1)

Selenomonas ruminantium

O50657 lysine decarboxylase (EC 4.1.1.18) from Selenomonas ruminantium
O50657 L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium
PFams: Ala_racemase_N, Orn_Arg_deC_N, Orn_DAP_Arg_deC
393 amino acids: PaperBLAST, CDD (Singleton 2)

Streptomyces coelicolor

Q9L072 lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor
Q9L072 L-lysine decarboxylase (EC 4.1.1.18) from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
PFams: Pyridoxal_deC, Beta_elim_lyase, Aminotran_5, SepSecS
480 amino acids: PaperBLAST, CDD (Cluster 2)

Vibrio parahaemolyticus

Q87KT6 lysine decarboxylase (EC 4.1.1.18) from Vibrio parahaemolyticus
PFams: OKR_DC_1_N, OKR_DC_1, OKR_DC_1_C
711 amino acids: PaperBLAST, CDD (Cluster 1)