GapMind for catabolism of small carbon sources

 

Other Characterized Proteins Similar to hisM

Finding the characterized proteins for hisM (L-lysine ABC transporter, permease component 1 (HisM)) in L-lysine catabolism

Or see clustering for step hisM

Or see all steps for L-lysine catabolism

Or cluster curated proteins matching a keyword

Definition of hisM

Fetched 7 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 11 other characterized sequences. (Found 17 hits including self hits.)

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for hisM.)

BPHYT_RS07680 ABC transporter for L-Arginine, permease component 1 from Burkholderia phytofirmans PsJN
PFams: BPD_transp_1
Heteromeric, 237 amino acids: PaperBLAST, CDD, reanno::BFirm:BPHYT_RS07680
66% identical to

Pf6N2E2_2960 ABC transporter for L-Lysine, permease component 2 from Pseudomonas fluorescens FW300-N2E2
PFams: BPD_transp_1
Heteromeric, 236 amino acids: PaperBLAST, CDD

TC 3.A.1.3.11 / O50183 AotP aka AotM aka PA0890, component of Arginine/ornithine (but not lysine) porter from Pseudomonas aeruginosa
PFams: BPD_transp_1
Heteromeric, 232 amino acids: PaperBLAST, CDD, TCDB::O50183
52% identical to

AO356_09910 ABC transporter for L-Lysine, permease component 2 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 229 amino acids: PaperBLAST, CDD

AO353_03045 ABC transporter for L-Arginine and L-Citrulline, permease component 1 from Pseudomonas fluorescens FW300-N2E3
PFams: BPD_transp_1
Heteromeric, 232 amino acids: PaperBLAST, CDD, reanno::pseudo3_N2E3:AO353_03045
51% identical to

AO356_09910 ABC transporter for L-Lysine, permease component 2 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 229 amino acids: PaperBLAST, CDD

PS417_21735 ABC transporter for L-Arginine, permease component 2 from Pseudomonas simiae WCS417
PFams: BPD_transp_1
Heteromeric, 232 amino acids: PaperBLAST, CDD, reanno::WCS417:GFF4243
50% identical to

AO356_09910 ABC transporter for L-Lysine, permease component 2 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 229 amino acids: PaperBLAST, CDD

Pf1N1B4_3433 ABC transporter for L-Arginine and L-Citrulline, permease component 2 from Pseudomonas fluorescens FW300-N1B4
PFams: BPD_transp_1
Heteromeric, 232 amino acids: PaperBLAST, CDD, reanno::pseudo1_N1B4:Pf1N1B4_3433
50% identical to

AO356_09910 ABC transporter for L-Lysine, permease component 2 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 229 amino acids: PaperBLAST, CDD

AO356_18710 L-Arginine ABC transporter, permease component 1 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 232 amino acids: PaperBLAST, CDD, reanno::pseudo5_N2C3_1:AO356_18710
50% identical to

AO356_09910 ABC transporter for L-Lysine, permease component 2 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 229 amino acids: PaperBLAST, CDD

Pf6N2E2_5662 L-Arginine ABC transporter, permease protein AotM from Pseudomonas fluorescens FW300-N2E2
PFams: BPD_transp_1
232 amino acids: PaperBLAST, CDD, reanno::pseudo6_N2E2:Pf6N2E2_5662
50% identical to

AO356_09910 ABC transporter for L-Lysine, permease component 2 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 229 amino acids: PaperBLAST, CDD

TC 3.A.1.3.5 / P35114 OCM1 aka OccM, component of Octopine porter from Agrobacterium tumefaciens
PFams: BPD_transp_1
Heteromeric, 245 amino acids: PaperBLAST, CDD, TCDB::P35114
47% identical to

AO356_09910 ABC transporter for L-Lysine, permease component 2 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 229 amino acids: PaperBLAST, CDD

TC 3.A.1.3.6 / P35113 NocM aka ATU6025 aka AGR_PTI_65, component of Nopaline porter from Agrobacterium tumefaciens
PFams: BPD_transp_1
Heteromeric, 241 amino acids: PaperBLAST, CDD, TCDB::P35113
44% identical to

AO356_09910 ABC transporter for L-Lysine, permease component 2 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 229 amino acids: PaperBLAST, CDD

b0861 L-arginine ABC transporter membrane subunit ArtM (EC 7.4.2.1) from Escherichia coli K-12 substr. MG1655
P0AE30 L-arginine ABC transporter membrane subunit ArtM (EC 7.4.2.1) from Escherichia coli (strain K12)
ARTM_ECOLI / P0AE30 Arginine ABC transporter permease protein ArtM from Escherichia coli (strain K12)
TC 3.A.1.3.3 / P0AE30 Arginine transport system permease protein ArtM aka B0861, component of Arginine porter from Escherichia coli
PFams: BPD_transp_1
Heteromeric, 222 amino acids: PaperBLAST, CDD, SwissProt::P0AE30
40% identical to

AO356_09910 ABC transporter for L-Lysine, permease component 2 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 229 amino acids: PaperBLAST, CDD

b1918 cystine ABC transporter membrane subunit (EC 7.4.2.12) from Escherichia coli K-12 substr. MG1655
P0AFT2 cystine ABC transporter membrane subunit (EC 7.4.2.12) from Escherichia coli (strain K12)
YECS_ECOLI / P0AFT2 L-cystine transport system permease protein YecS from Escherichia coli (strain K12)
TC 3.A.1.3.10 / P0AFT2 Inner membrane amino-acid ABC transporter permease protein YECS CysY aka B1918, component of Cystine/cysteine/diaminopimelate transporter, CysXYZ; these proteins are also designated FliY/YecS/YecC from Escherichia coli
PFams: BPD_transp_1
Heteromeric, 222 amino acids: PaperBLAST, CDD, SwissProt::P0AFT2
40% identical to

AO356_09910 ABC transporter for L-Lysine, permease component 2 from Pseudomonas fluorescens FW300-N2C3
PFams: BPD_transp_1
Heteromeric, 229 amino acids: PaperBLAST, CDD