GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for kamA (L-lysine 2,3-aminomutase) in L-lysine catabolism

Or see other characterized proteins similar to kamA

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Definition of kamA

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 416-473 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A0A0K0QCW0 lysine 2,3-aminomutase (EC 5.4.3.2) from Bacillus thuringiensis serovar kurstaki
PFams: Fer4_12, LAM_C
473 amino acids: PaperBLAST, CDD, Compare to cluster

G3F9W8 lysine 2,3-aminomutase (EC 5.4.3.2) from Methanocalculus chunghsingensis
PFams: Radical_SAM, LAM_C
439 amino acids: PaperBLAST, CDD, Compare to cluster

G3F9X2 lysine 2,3-aminomutase (EC 5.4.3.2) from Methanohalophilus portucalensis
PFams: Radical_SAM, LAM_C
437 amino acids: PaperBLAST, CDD, Compare to cluster

KAMA_BACSU / O34676 L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Bacillus subtilis (strain 168)
PFams: LAM_C
471 amino acids: PaperBLAST, CDD, Compare to cluster

ABLA_METMP / Q6LYX4 L-lysine 2,3-aminomutase; LAM; EC 5.4.3.2 from Methanococcus maripaludis (strain S2 / LL)
Q6LYX4 lysine 2,3-aminomutase (EC 5.4.3.2) from Methanococcus maripaludis
PFams: Fer4_14, Fer4_12, Radical_SAM, LAM_C
433 amino acids: PaperBLAST, CDD, Compare to cluster

ABLA_METMA / Q8PYC9 L-lysine 2,3-aminomutase; LAM; EC 5.4.3.2 from Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) (Methanosarcina frisia)
Q8PYC9 lysine 2,3-aminomutase (EC 5.4.3.2) from Methanosarcina mazei
PFams: LAM_C
419 amino acids: PaperBLAST, CDD, Compare to cluster

KAMA_FUSNN / Q8RHX4 L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131)
PFams: Radical_SAM, LAM_C
425 amino acids: PaperBLAST, CDD, Compare to cluster

Q9XBQ8 lysine 2,3-aminomutase (EC 5.4.3.2) from Clostridium subterminale
KAMA_CLOSU / Q9XBQ8 L-lysine 2,3-aminomutase; LAM; KAM; EC 5.4.3.2 from Clostridium subterminale
Q9XBQ8 lysine 2,3-aminomutase (EC 5.4.3.2) from Clostridium subterminale
PFams: Radical_SAM, LAM_C
416 amino acids: PaperBLAST, CDD, Compare to cluster