GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for lat (L-lysine 6-aminotransferase) in L-lysine catabolism

Or see other characterized proteins similar to lat

Or see all steps for L-lysine catabolism

Or cluster curated proteins matching a keyword

Definition of lat

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 443-457 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A4F7V1 L-lysine 6-transaminase (EC 2.6.1.36) from Saccharopolyspora erythraea
PFams: Aminotran_3
447 amino acids: PaperBLAST, CDD, Compare to cluster

P9WQ77 L-lysine 6-transaminase (EC 2.6.1.36) from Mycobacterium tuberculosis
PFams: Aminotran_3
449 amino acids: PaperBLAST, CDD, Compare to cluster

Q5XPV2 L-lysine 6-transaminase (EC 2.6.1.36) from Streptomyces clavuligerus
PFams: Aminotran_3
457 amino acids: PaperBLAST, CDD, Compare to cluster

Q01767 lysine ε-aminotransferase (EC 2.6.1.36) from Streptomyces clavuligerus
PFams: Aminotran_3
457 amino acids: PaperBLAST, CDD, Compare to cluster

CA265_RS14455 L-lysine 6-transaminase (EC 2.6.1.36) from Pedobacter sp. GW460-11-11-14-LB5
PFams: Aminotran_3
443 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

ORNAT_THEKO / Q5JEW1 Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
PFams: Aminotran_3
445 amino acids: PaperBLAST, CDD