GapMind for catabolism of small carbon sources


Clusters of Characterized Proteins

Clustering the characterized proteins for lysDH (L-lysine 6-dehydrogenase) in L-lysine catabolism

Or see other characterized proteins similar to lysDH

Or see all steps for L-lysine catabolism

Or cluster curated proteins matching a keyword

Definition of lysDH

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 368-385 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q5LX24 lysine 6-dehydrogenase (EC from Ruegeria pomeroyi
PFams: Sacchrp_dh_NADP, TrkA_N, Sacchrp_dh_C
368 amino acids: PaperBLAST, CDD, Compare to cluster

Q3S559 lysine 6-dehydrogenase (EC from Achromobacter denitrificans
PFams: F420_oxidored, Sacchrp_dh_NADP
368 amino acids: PaperBLAST, CDD, Compare to cluster

LYSDH_GEOSE / Q9AJC6 Lysine 6-dehydrogenase; L-lysine 6-dehydrogenase; L-lysine epsilon-dehydrogenase; EC from Geobacillus stearothermophilus (Bacillus stearothermophilus)
Q9AJC6 lysine 6-dehydrogenase (EC from Geobacillus stearothermophilus
Q9AJC6 L-lysine 6-dehydrogenase subunit from Geobacillus stearothermophilus
PFams: Shikimate_DH, Sacchrp_dh_NADP, Sacchrp_dh_C
385 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

O59312 lysine 6-dehydrogenase (EC from Pyrococcus horikoshii
PFams: AlaDh_PNT_C, Sacchrp_dh_NADP, Sacchrp_dh_C
352 amino acids: PaperBLAST, CDD
(similar to SwissProt::Q9AJC6 from Cluster 1, but similarity to seed sequence is below thresholds)