Other Characterized Proteins Similar to lysN

GapMind for catabolism of small carbon sources

Other Characterized Proteins Similar to lysN

Finding the characterized proteins for lysN (2-aminoadipate transaminase) in L-lysine catabolism

Or see clustering for step lysN

Or see all steps for L-lysine catabolism

Or cluster curated proteins matching a keyword

Definition of lysN

Curated proteins or TIGRFams with EC 2.6.1.39
Ignore hits to Q06191 when looking for 'other' hits (Aspartate aminotransferase; AAT; AspAT; Transaminase A; EC 2.6.1.1)
Comment: Q06191 is very similar to SMc04386 (P58350), which is specifically important for lysine utilization.

Fetched 8 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 26 other characterized sequences. (Found 34 hits including self hits.)

Removing ignored items reduces this to 25 close sequences.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for lysN.)

AAPAT_RHIME / Q02635 Aspartate/prephenate aminotransferase; AspAT / PAT; Transaminase A; EC 2.6.1.1; EC 2.6.1.79 from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
Q02635 aspartate transaminase (EC 2.6.1.1); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Sinorhizobium meliloti
PFams: Aminotran_1_2, DegT_DnrJ_EryC1
400 amino acids: PaperBLAST, CDD, SwissProt::Q02635
58% identical to

SMc04386 2-aminoadipate:2-oxoglutarate aminotransferase (EC 2.6.1.39) from Sinorhizobium meliloti 1021
AAT_RHIME / P58350 Aspartate aminotransferase; AAT; AspAT; Putative 2-aminoadipate transaminase; Transaminase A; EC 2.6.1.1; EC 2.6.1.39 from Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium meliloti)
PFams: Aminotran_1_2, DegT_DnrJ_EryC1
410 amino acids: PaperBLAST, CDD

AAPAT_RHOS1 / A3PMF8 Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.79 from Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9)
PFams: Aminotran_1_2, DegT_DnrJ_EryC1
400 amino acids: PaperBLAST, CDD, SwissProt::A3PMF8
57% identical to

AAPAT_NITEU / Q82WA8 Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.79 from Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298)
PFams: Aminotran_1_2, DegT_DnrJ_EryC1, Aminotran_MocR
397 amino acids: PaperBLAST, CDD, SwissProt::Q82WA8
51% identical to

AAPAT_CHLTE / Q8KDS8 Aspartate/prephenate aminotransferase; AspAT / PAT; EC 2.6.1.1; EC 2.6.1.78 from Chlorobaculum tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) (Chlorobium tepidum)
PFams: Aminotran_1_2, Cys_Met_Meta_PP, DegT_DnrJ_EryC1
400 amino acids: PaperBLAST, CDD, SwissProt::Q8KDS8
48% identical to

Ac3H11_1358 L-leucine transaminase; L-isoleucine transaminase (EC 2.6.1.42) from Acidovorax sp. GW101-3H11
PFams: Aminotran_1_2, Aminotran_MocR
401 amino acids: PaperBLAST, CDD, reanno::acidovorax_3H11:Ac3H11_1358
45% identical to

LYSN_THET2 / Q72LL6 2-aminoadipate transaminase; 2-aminoadipate aminotransferase; Alpha-aminoadipate aminotransferase; AAA-AT; AadAT; EC 2.6.1.39 from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
Q72LL6 2-aminoadipate transaminase (EC 2.6.1.39) from Thermus thermophilus
PFams: Aminotran_1_2, Aminotran_MocR
397 amino acids: PaperBLAST, CDD

b2662 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli K-12 substr. MG1655
P22256 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli (strain K12)
GABT_ECOLI / P22256 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli (strain K12)
PFams: Aminotran_3
426 amino acids: PaperBLAST, CDD, SwissProt::P22256
44% identical to