GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for pgmB (beta-phosphoglucomutase) in D-maltose catabolism

Or see other characterized proteins similar to pgmB

Or see all steps for D-maltose catabolism

Or cluster curated proteins matching a keyword

Definition of pgmB

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 219-226 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

PGMB_LACLA / P71447 Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus lactis)
P71447 beta-Phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis subsp. lactis
P71447 β-phosphoglucomutase (EC 5.4.2.6) from Lactococcus lactis subsp. lactis (strain IL1403)
PFams: Hydrolase, HAD_2
221 amino acids: PaperBLAST, CDD, Compare to cluster

PGMB_BACSU / O06995 Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Bacillus subtilis (strain 168)
PFams: Hydrolase, HAD_2
226 amino acids: PaperBLAST, CDD, Compare to cluster

PGMB_ECOLI / P77366 Beta-phosphoglucomutase; Beta-PGM; EC 5.4.2.6 from Escherichia coli (strain K12)
P77366 β-phosphoglucomutase (EC 5.4.2.6) from Escherichia coli (strain K12)
PFams: Hydrolase, HAD_2, Hydrolase_like
219 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

I3RFR5 beta-Phosphoglucomutase (EC 5.4.2.6) from Pyrococcus sp.
I3RFR5 β-phosphoglucomutase (EC 5.4.2.6) from Pyrococcus sp. ST04
PFams: HAD_2
234 amino acids: PaperBLAST, CDD